YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL31B
Organism:	Saccharomyces cerevisiae
Length:	113 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL31B.

Description	E-value	Query Range	Subject Range
tr\|G1SHG0\|G1SHG0... - pep:novel chromosome:oryCun2:2:91339752:91344456:-1 gene:ENSOCUG00000002392 transcript:ENSOCUT000000... RL31_MARMO - 60S ribosomal protein L31 OS=Marmota monax GN=RPL31 PE=2 SV=1 gi\|109103997, gi... - gi\|109103999\|ref\|XP_001106564.1\| PREDICTED: similar to ribosomal protein L31 isoform 2 [Macaca mulat... RL31_MOUSE - 60S ribosomal protein L31 OS=Mus musculus GN=Rpl31 PE=1 SV=1 RL31_BOVIN - 60S ribosomal protein L31 OS=Bos taurus GN=RPL31 PE=2 SV=1 tr\|M3XB63\|M3XB63... - Uncharacterized protein OS=Felis catus GN=RPL31 PE=4 SV=1 gi\|73979562, gi\|... - gi\|74002345\|ref\|XP_853054.1\| PREDICTED: similar to ribosomal protein L31 [Canis familiaris], gi\|7398... RPL31 - ribosomal protein L31 RL31_RAT - 60S ribosomal protein L31 OS=Rattus norvegicus GN=Rpl31 PE=2 SV=1 gi\|114601718, gi... - gi\|55624778\|ref\|XP_517937.1\| PREDICTED: similar to ribosomal protein L31 [Pan troglodytes], gi\|11460... RL31_PIG - 60S ribosomal protein L31 OS=Sus scrofa GN=RPL31 PE=1 SV=1 ENSCJAT00000043840 - null gi\|149727290 - gi\|149727290\|ref\|XP_001489519.1\| PREDICTED: similar to ribosomal protein L31 [Equus caballus] tr\|G3HHK3\|G3HHK3... - 60S ribosomal protein L31 OS=Cricetulus griseus GN=I79_010107 PE=4 SV=1 gi\|208967320, gi... - gi\|208967320\|dbj\|BAG73674.1\| ribosomal protein L31 [synthetic construct], gi\|123998347\|gb\|ABM86775.1... gi\|90075116 - gi\|90075116\|dbj\|BAE87238.1\| unnamed protein product [Macaca fascicularis]	1.0E-48	[2..112]	[15..125]
gi\|12859322 - gi\|12859322\|dbj\|BAB31611.1\| unnamed protein product [Mus musculus]	5.0E-48	[2..112]	[15..125]
RL31_ICTPU - 60S ribosomal protein L31 OS=Ictalurus punctatus GN=rpl31 PE=2 SV=1	2.0E-46	[2..112]	[15..125]
RL31_PAROL - 60S ribosomal protein L31 OS=Paralichthys olivaceus GN=rpl31 PE=2 SV=1	2.0E-45	[2..112]	[14..124]
RL31_CYAPA - 60S ribosomal protein L31 OS=Cyanophora paradoxa GN=RPL31 PE=3 SV=1	1.0E-40	[2..112]	[9..119]
RPL31A - Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl31Bp and has similari... gi\|151941927 - gi\|151941927\|gb\|EDN60283.1\| ribosomal protein L31A [Saccharomyces cerevisiae YJM789] RL31A_YEAST - 60S ribosomal protein L31-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL31A PE=1 ... gi\|190405082 - gi\|190405082\|gb\|EDV08349.1\| ribosomal protein L31A [Saccharomyces cerevisiae RM11-1a]	5.0E-38	[1..113]	[1..113]
RL31_HELVI - 60S ribosomal protein L31 OS=Heliothis virescens GN=RpL31 PE=2 SV=1 RL31_SPOFR - 60S ribosomal protein L31 OS=Spodoptera frugiperda GN=RpL31 PE=2 SV=1	6.0E-38	[2..110]	[12..120]
RL31_AEDAE - 60S ribosomal protein L31 OS=Aedes aegypti GN=RpL31 PE=2 SV=1	1.0E-36	[2..110]	[12..120]

Back

Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLKDVVTR EYTINLHKRL HGVSFKKRAP RAVKEIKKFA KLHMGTEDVR LAPELNQAIW  60
   61 KRGVKGVEYR LRLRISRKRN EEEDAKNPLF SYVEPVLVAS AKGLQTVVVE EDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	355.69897
Match:	1k5yW_
Description:	No description for 1k5yW_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits