| Protein: | IKI3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1349 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IKI3.
| Description | E-value | Query Range |
Subject Range |
|
|
1184.0 | [0..51] | [1325..23] |
|
|
1180.0 | [0..51] | [1325..23] |
|
|
1168.0 | [0..51] | [1325..23] |
|
|
1165.0 | [0..51] | [1325..23] |
|
Region A: Residues: [1-548] |
1 11 21 31 41 51
| | | | | |
1 MVEHDKSGSK RQELRSNMRN LITLNKGKFK PTASTAEGDE DDLSFTLLDS VFDTLSDSIT 60
61 CVLGSTDIGA IEVQQFMKDG SRNVLASFNI QTFDDKLLSF VHFADINQLV FVFEQGDIIT 120
121 ATYDPVSLDP AETLIEIMGT IDNGIAAAQW SYDEETLAMV TKDRNVVVLS KLFEPISEYH 180
181 LEVDDLKISK HVTVGWGKKE TQFRGKGARA MEREALASLK ASGLVGNQLR DPTMPYMVDT 240
241 GDVTALDSHE ITISWRGDCD YFAVSSVEEV PDEDDETKSI KRRAFRVFSR EGQLDSASEP 300
301 VTGMEHQLSW KPQGSLIASI QRKTDLGEED SVDVIFFERN GLRHGEFDTR LPLDEKVESV 360
361 CWNSNSEALA VVLANRIQLW TSKNYHWYLK QELYASDISY VKWHPEKDFT LMFSDAGFIN 420
421 IVDFAYKMAQ GPTLEPFDNG TSLVVDGRTV NITPLALANV PPPMYYRDFE TPGNVLDVAC 480
481 SFSNEIYAAI NKDVLIFAAV PSIEEMKKGK HPSIVCEFPK SEFTSEVDSL RQVAFINDSI 540
541 VGVLLDTD
|
| Detection Method: |  |
| Confidence: | 67.69897 |
| Match: | 1nr0A |
| Description: | Actin interacting protein 1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [549-629] |
1 11 21 31 41 51
| | | | | |
1 NLSRIALLDI QDITQPTLIT IVEVYDKIVL LRSDFDYNHL VYETRDGTVC QLDAEGQLME 60
61 ITKFPQLVRD FRVKRVHNTS A
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [630-1188] |
1 11 21 31 41 51
| | | | | |
1 EDDDNWSAES SELVAFGITN NGKLFANQVL LASAVTSLEI TDSFLLFTTA QHNLQFVHLN 60
61 STDFKPLPLV EEGVEDERVR AIERGSILVS VIPSKSSVVL QATRGNLETI YPRIMVLAEV 120
121 RKNIMAKRYK EAFIVCRTHR INLDILHDYA PELFIENLEV FINQIGRVDY LNLFISCLSE 180
181 DDVTKTKYKE TLYSGISKSF GMEPAPLTEM QIYMKKKMFD PKTSKVNKIC DAVLNVLLSN 240
241 PEYKKKYLQT IITAYASQNP QNLSAALKLI SELENSEEKD SCVTYLCFLQ DVNVVYKSAL 300
301 SLYDVSLALL VAQKSQMDPR EYLPFLQELQ DNEPLRRKFL IDDYLGNYEK ALEHLSEIDK 360
361 DGNVSEEVID YVESHDLYKH GLALYRYDSE KQNVIYNIYA KHLSSNQMYT DAAVAYEMLG 420
421 KLKEAMGAYQ SAKRWREAMS IAVQKFPEEV ESVAEELISS LTFEHRYVDA ADIQLEYLDN 480
481 VKEAVALYCK AYRYDIASLV AIKAKKDELL EEVVDPGLGE GFGIIAELLA DCKGQINSQL 540
541 RRLRELRAKK EENPYAFYG
|
| Detection Method: | |
| Confidence: | 2.25 |
| Match: | 2gw1A |
| Description: | No description for 2gw1A was found. |
|
Region A: Residues: [1189-1349] |
1 11 21 31 41 51
| | | | | |
1 QETEQADDVS VAPSETSTQE SFFTRYTGKT GGTAKTGASR RTAKNKRREE RKRARGKKGT 60
61 IYEEEYLVQS VGRLIERLNQ TKPDAVRVVE GLCRRNMREQ AHQIQKNFVE VLDLLKANVK 120
121 EIYSISEKDR ERVNENGEVY YIPEIPVPEI HDFPKSHIVD F
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.757 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.757 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.549 | N/A | N/A | a.205.1 | Description not found. |
| View | Download | 0.455 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.432 | N/A | N/A | f.21.3 | Description not found. |
| View | Download | 0.338 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.335 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.316 | N/A | N/A | a.7.1 | Spectrin repeat |
