| Protein: | ROM2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1356 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ROM2.
| Description | E-value | Query Range |
Subject Range |
|
|
913.0 | [0..1] | [1356..1] |
|
|
882.0 | [0..188] | [1354..21] |
|
|
834.0 | [0..240] | [1355..184] |
|
|
830.0 | [0..86] | [1356..55] |
|
|
755.0 | [0..81] | [1345..30] |
|
|
574.0 | [0..146] | [1354..34] |
|
|
562.0 | [0..219] | [1329..8] |
|
Region A: Residues: [1-137] |
1 11 21 31 41 51
| | | | | |
1 MSETNVDSLG DRNDIYSQIF GVERRPDSFA TFDSDSHGDI SSQLLPNRIE NIQNLNVLLS 60
61 EDIANDIIIA KQRRRSGVEA AIDDSDIPNN EMKGKSSNYI LSQQTNIKEV PDTQSLSSAD 120
121 NTPVSSPKKA RDATSSH
|
| Detection Method: |  |
| Confidence: | 12.41 |
| Match: | |
| Description: | No description for 1ldvA was found. |
|
Region A: Residues: [138-531] |
1 11 21 31 41 51
| | | | | |
1 PIVHAKSMSH IYSTSNSASR QAKHYNDHPL PPMSPRNEVY QKNKSTTAFV PKRKPSLPQL 60
61 ALAGLKKQSS FSTGSASTTP TQARKSPLQG FGFFSRPSSK DLHEQHQHHQ HIQHNNINNH 120
121 NNNNTNNNGA HYQVGSSNSN YPQHSHSISS RSMSLNSSTL KNIASSFQSK TSNSRKATQK 180
181 YDITSNPFSD PHHHHHHHHS SNSHSSLNNV HGSGNSSSVM GSSSNIGLGL KTRVSSTSLA 240
241 LKRYTSVSGT SLSSPRRSSM TPLSASRPVM SASSKKPQVY PALLSRVATK FKSSIQLGEH 300
301 KKDGLVYRDA FTGQQAVDVI CAIIRTSDRN LALLFGRSLD AQKLFHDVVY EHRLRDSPHE 360
361 VYEFTDNSRF TGTGSTNAHD PLMLLPNSSS FNSG
|
| Detection Method: | |
| Confidence: | 12.45 |
| Match: | |
| Description: | No description for 1m2vB was found. |
|
Region A: Residues: [532-641] |
1 11 21 31 41 51
| | | | | |
1 NHSYPNSGMV PSSSTSSLNS DQATLTGSRL HMSSSLSQQK NPAAIHNVNG VFTLLAECYS 60
61 PTCTRDALCY SISCPRRLEQ QARLNLKPNG GLKRNISMAL DDDDEEKPSW
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [642-849] |
1 11 21 31 41 51
| | | | | |
1 TSSVSKEDWE NLPKKEIKRQ EAIYEVYITE KNFVKSLEIT RDTFMKTLAE TNIISADIRK 60
61 NFIKHVFAHI NDIYSVNRRF LKALTDRQRS SPVVRGIGDI VLRFIPFFEP FVSYVASRPY 120
121 AKYLIETQRS VNPYFARFDD DMMSSSLRHG IDSFLSQGVS RPGRYMLLVK EIMKSTDPEK 180
181 DKSDYEDLSK AMDALRDFMK RIDQASGA
|
| Detection Method: | |
| Confidence: | 197.9897 |
| Match: | 1ki1B |
| Description: | GEF of intersectin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [850-1032] |
1 11 21 31 41 51
| | | | | |
1 AQDRHDVKLL KQKILFKNEY VNLGLNDERR KIKHEGILSR KELSKSDGTV VGDIQFYLLD 60
61 NMLLFLKAKA VNKWHQHKVF QRPIPLPLLF ACPGEDMPAL RKYIGDHPDC SGTVIQPEYN 120
121 TSNPKNAITF LYYGAKQRYQ VTLYAAQYAG LQTLLEKIKQ GQAAIISKTE MFNVTKMSDR 180
181 FFD
|
| Detection Method: | |
| Confidence: | 197.9897 |
| Match: | 1ki1B |
| Description: | GEF of intersectin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1033-1356] |
1 11 21 31 41 51
| | | | | |
1 YTNKINSVTS CDGGRKLLIA TNSGLYMSNI KRQQNKDHRH KSSAFFSTPI QLVQRNNITQ 60
61 IAVLEEFKSI ILLIDKKLYS CPLSLIEAEG NGTSFFKKHH KELINHVSFF AEGDCNGKRL 120
121 IVTAHSSSHS IKYFEHEHPL LAEKNGSGSG NKKSLKKKIT EVIFDSEPVS ISFLKANLCI 180
181 GCKKGFQIVS ISQNAHESLL DPADTSLEFA LRDTLKPMAI YRVGNMFLLC YTEFAFFVNN 240
241 QGWRKKESHI IHWEGEPQKF AIWYPYILAF DSNFIEIRKI ETGELIRCVL ADKIRLLQTS 300
301 TQEILYCYED YRGYDTVASL DFWG
|
| Detection Method: | |
| Confidence: | 104.552842 |
| Match: | PF00780 |
| Description: | CNH domain |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
