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View Structure Prediction Details

Protein: MDM30
Organism: Saccharomyces cerevisiae
Length: 598 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MDM30.

Description E-value Query
Range
Subject
Range
MDM30_YEAST - Mitochondrial distribution and morphology protein 30 OS=Saccharomyces cerevisiae (strain ATCC 204508...
MDM30 - F-box protein; associates with mitochondria and has a role in mitochondrial fusion; stimulates nucle...
0.0 [1..598] [1..598]
gi|12859828 - gi|12859828|dbj|BAB31793.1| unnamed protein product [Mus musculus]
0.009 [15..68] [12..65]

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Predicted Domain #1
Region A:
Residues: [1-75]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKRRNLFMV GSSFTIDHLP PEIWLCISKL VGTSDLHNLC LINRRLYLTI TSDEIWKRRC  60
   61 YDRWINRESL DILTG

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 5.180456
Match: PF00646
Description: F-box domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [76-598]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDYDSIPVSQ WYSYYLRRAK WENKIFCLLW GLTEETNPQH FREKYLHILQ FRHYKLATFL  60
   61 HRIIKQGYIP DKRPLDLITY ANYLLKNVRH KYVFPLFYPT NAAELKNLNN MASRDAEMIY 120
  121 LRLSAIDTSF DDLLDAREFI LNGICSDLLQ KYKKIEEFLK LRPVTRVSKL ISISTDYLDC 180
  181 FTQPHDSVGQ TNDRATGREL HREDFMLLRV YSREGRGYKT IILAIIQAIT KRYNVDSYLA 240
  241 RDHLVVSEPD FPDGRAFVTV NEDFQPYIFD KEDLLSVWSN NFHNAENFES TVLPALLEPI 300
  301 SIQHLLTEFF RELLRCKPRP FEGYPNRAHG LRDMFPYGKV EVPRDVTMYF AFIYDLFDGM 360
  361 FESGMTSLRG QMLRDLLNYV NANNFGDLNI IIGQNALKEP NDCWSNKRDY VLLDDNNKIG 420
  421 YFYTDIETED TLCALNQYEV DGKVFITTID ILGDIRVRLA EGLTPFQGDN DKLWESFSSV 480
  481 VPRTDWGLFF KGYDKERRRM QLNPYIEEKL SNLANDEQPL HNL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [338-460]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFQPYIFDKE DLLSVWSNNF HNAENFESTV LPALLEPISI QHLLTEFFRE LLRCKPRPFE  60
   61 GYPNRAHGLR DMFPYGKVEV PRDVTMYFAF IYDLFDGMFE SGMTSLRGQM LRDLLNYVNA 120
  121 NNF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [461-598]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDLNIIIGQN ALKEPNDCWS NKRDYVLLDD NNKIGYFYTD IETEDTLCAL NQYEVDGKVF  60
   61 ITTIDILGDI RVRLAEGLTP FQGDNDKLWE SFSSVVPRTD WGLFFKGYDK ERRRMQLNPY 120
  121 IEEKLSNLAN DEQPLHNL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle