| Protein: | MDM30 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 598 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MDM30.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..598] | [1..598] |
|
|
0.009 | [15..68] | [12..65] |
|
Region A: Residues: [1-75] |
1 11 21 31 41 51
| | | | | |
1 MTKRRNLFMV GSSFTIDHLP PEIWLCISKL VGTSDLHNLC LINRRLYLTI TSDEIWKRRC 60
61 YDRWINRESL DILTG
|
| Detection Method: |  |
| Confidence: | 5.180456 |
| Match: | PF00646 |
| Description: | F-box domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [76-598] |
1 11 21 31 41 51
| | | | | |
1 NDYDSIPVSQ WYSYYLRRAK WENKIFCLLW GLTEETNPQH FREKYLHILQ FRHYKLATFL 60
61 HRIIKQGYIP DKRPLDLITY ANYLLKNVRH KYVFPLFYPT NAAELKNLNN MASRDAEMIY 120
121 LRLSAIDTSF DDLLDAREFI LNGICSDLLQ KYKKIEEFLK LRPVTRVSKL ISISTDYLDC 180
181 FTQPHDSVGQ TNDRATGREL HREDFMLLRV YSREGRGYKT IILAIIQAIT KRYNVDSYLA 240
241 RDHLVVSEPD FPDGRAFVTV NEDFQPYIFD KEDLLSVWSN NFHNAENFES TVLPALLEPI 300
301 SIQHLLTEFF RELLRCKPRP FEGYPNRAHG LRDMFPYGKV EVPRDVTMYF AFIYDLFDGM 360
361 FESGMTSLRG QMLRDLLNYV NANNFGDLNI IIGQNALKEP NDCWSNKRDY VLLDDNNKIG 420
421 YFYTDIETED TLCALNQYEV DGKVFITTID ILGDIRVRLA EGLTPFQGDN DKLWESFSSV 480
481 VPRTDWGLFF KGYDKERRRM QLNPYIEEKL SNLANDEQPL HNL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.674 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.574 | c.84.1 | Phosphoglucomutase, first 3 domains |
| View | Download | 0.569 | a.166.1 | RuBisCo LSMT C-terminal, substrate-binding domain |
| View | Download | 0.544 | b.29.1 | Concanavalin A-like lectins/glucanases |
| View | Download | 0.496 | f.14.1 | Voltage-gated potassium channels |
|
Region A: Residues: [338-460] |
1 11 21 31 41 51
| | | | | |
1 DFQPYIFDKE DLLSVWSNNF HNAENFESTV LPALLEPISI QHLLTEFFRE LLRCKPRPFE 60
61 GYPNRAHGLR DMFPYGKVEV PRDVTMYFAF IYDLFDGMFE SGMTSLRGQM LRDLLNYVNA 120
121 NNF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [461-598] |
1 11 21 31 41 51
| | | | | |
1 GDLNIIIGQN ALKEPNDCWS NKRDYVLLDD NNKIGYFYTD IETEDTLCAL NQYEVDGKVF 60
61 ITTIDILGDI RVRLAEGLTP FQGDNDKLWE SFSSVVPRTD WGLFFKGYDK ERRRMQLNPY 120
121 IEEKLSNLAN DEQPLHNL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.713 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.701 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.659 | b.61.1 | Avidin/streptavidin |
| View | Download | 0.557 | b.61.1 | Avidin/streptavidin |
| View | Download | 0.471 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
