| Protein: | VPS38 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 439 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS38.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..439] | [1..439] |
|
Region A: Residues: [1-128] |
1 11 21 31 41 51
| | | | | |
1 MKRFLLSRRQ RHLRMICFHN ISLFRANGDS KLIKEYGDGF IPCFFILESI RGELLYVSEV 60
61 QSGSLRKLSF QELPKLTGAS TMIVLKLVGL VPSDILCTIS SDKNGIIDDK WCVLCTYTID 120
121 LNKLQPIN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.459 | a.118.8 | TPR-like |
| View | Download | 0.504 | c.95.1 | Thiolase-like |
| View | Download | 0.561 | c.78.1 | Aspartate/ornithine carbamoyltransferase |
| View | Download | 0.487 | a.47.2 | t-snare proteins |
| View | Download | 0.497 | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.561 | c.78.1 | Aspartate/ornithine carbamoyltransferase |
| View | Download | 0.504 | c.95.1 | Thiolase-like |
| View | Download | 0.497 | a.29.5 | alpha-ketoacid dehydrogenase kinase, N-terminal domain |
| View | Download | 0.487 | a.47.2 | t-snare proteins |
| View | Download | 0.459 | a.118.8 | TPR-like |
| View | Download | 0.434 | a.24.11 | Bacterial GAP domain |
| View | Download | 0.410 | a.24.4 | Hemerythrin |
| View | Download | 0.407 | a.1.1 | Globin-like |
| View | Download | 0.404 | a.1.1 | Globin-like |
| View | Download | 0.384 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.373 | c.23.1 | CheY-like |
| View | Download | 0.368 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.349 | f.32.1 | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.338 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.335 | a.92.1 | Carbamoyl phosphate synthetase, large subunit connection domain |
| View | Download | 0.335 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.327 | a.22.1 | Histone-fold |
| View | Download | 0.326 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.326 | d.58.26 | GHMP Kinase, C-terminal domain |
| View | Download | 0.322 | d.13.1 | HIT-like |
| View | Download | 0.320 | d.146.1 | Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |
| View | Download | 0.317 | d.205.1 | GTP cyclohydrolase I feedback regulatory protein, GFRP |
| View | Download | 0.300 | a.26.1 | 4-helical cytokines |
| View | Download | 0.296 | a.92.1 | Carbamoyl phosphate synthetase, large subunit connection domain |
| View | Download | 0.275 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.270 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.265 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.252 | a.182.1 | GatB/YqeY domain |
| View | Download | 0.247 | a.7.1 | Spectrin repeat |
| View | Download | 0.246 | a.26.1 | 4-helical cytokines |
| View | Download | 0.242 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.237 | d.26.1 | FKBP-like |
| View | Download | 0.233 | g.53.1 | TAZ domain |
| View | Download | 0.229 | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.225 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.223 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.210 | d.59.1 | Ribosomal protein L30p/L7e |
| View | Download | 0.210 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
|
Region A: Residues: [129-314] |
1 11 21 31 41 51
| | | | | |
1 EDTVLITGTN APVLDLIDGS YTLAAEKIKP LKGLVSSHKR NISQVKIKFS LAYSSLLKLN 60
61 KLLEYSSQVH EEINEISSKI EDDFLSLKNQ NHWYMRTVQK SIETLEKEVL QRKKSKKNIE 120
121 MAQLESNDTI NHSKTELSLM SQDESINDDY GSIYSRFVQI KDRLDQLRFK KLYQLIGIFH 180
181 STDLFN
|
| Detection Method: | |
| Confidence: | 2.69897 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [315-439] |
1 11 21 31 41 51
| | | | | |
1 SDRGYIYFEK PSSVNDVINR LKLKPLNIEI LLRQAGESTK HREYVNSQLG YYLLFLHLTA 60
61 IQIFKAPLPY RLMYYGSTSV IDSQYPLYFT DQMISKHQAK LIKAIHYFNA DILQFKQILE 120
121 NYRPT
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.595 | a.1.1 | Globin-like |
| View | Download | 0.583 | a.26.1 | 4-helical cytokines |
| View | Download | 0.701 | a.74.1 | Cyclin-like |
| View | Download | 0.648 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.572 | a.74.1 | Cyclin-like |
| View | Download | 0.555 | a.1.1 | Globin-like |
| View | Download | 0.554 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.493 | a.63.1 | Apolipophorin-III |
| View | Download | 0.490 | d.233.1 | Inhibitor of vertebrate lysozyme, Ivy |
| View | Download | 0.449 | a.118.1 | ARM repeat |
| View | Download | 0.439 | a.1.1 | Globin-like |
| View | Download | 0.438 | a.7.7 | BAG domain |
| View | Download | 0.434 | a.39.1 | EF-hand |
| View | Download | 0.428 | a.24.3 | Cytochromes |
| View | Download | 0.426 | a.4.3 | ARID-like |
| View | Download | 0.421 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.405 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.405 | a.26.1 | 4-helical cytokines |
| View | Download | 0.405 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.401 | a.66.1 | Transducin (alpha subunit), insertion domain |
| View | Download | 0.401 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.398 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.392 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.391 | a.1.1 | Globin-like |
| View | Download | 0.388 | d.56.1 | GroEL-intermediate domain like |
| View | Download | 0.388 | c.23.1 | CheY-like |
| View | Download | 0.377 | a.24.3 | Cytochromes |
| View | Download | 0.373 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.367 | a.29.2 | Bromodomain |
| View | Download | 0.362 | d.185.1 | LuxS/MPP-like metallohydrolase |
| View | Download | 0.360 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.351 | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.349 | a.19.1 | Fertilization protein |
| View | Download | 0.349 | d.58.22 | TRADD, N-terminal domain |
| View | Download | 0.346 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.343 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.336 | a.74.1 | Cyclin-like |
| View | Download | 0.332 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.329 | a.74.1 | Cyclin-like |
| View | Download | 0.329 | a.26.1 | 4-helical cytokines |
| View | Download | 0.322 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.321 | d.198.2 | Arp2/3 complex subunits |
| View | Download | 0.310 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.309 | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.306 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.292 | a.1.1 | Globin-like |
| View | Download | 0.289 | a.158.1 | F-box domain |
| View | Download | 0.281 | d.79.5 | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF |
| View | Download | 0.274 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.272 | c.110.1 | D-Tyr tRNAtyr deacylase, DTD |
| View | Download | 0.271 | a.4.3 | ARID-like |
| View | Download | 0.269 | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
| View | Download | 0.267 | d.58.39 | Glutamyl tRNA-reductase catalytic, N-terminal domain |
| View | Download | 0.265 | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.264 | a.1.1 | Globin-like |
| View | Download | 0.264 | d.110.4 | SNARE-like |
| View | Download | 0.262 | a.11.2 | Second domain of FERM |
| View | Download | 0.261 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.261 | a.74.1 | Cyclin-like |
| View | Download | 0.260 | d.189.1 | PX domain |
| View | Download | 0.259 | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.259 | a.74.1 | Cyclin-like |
| View | Download | 0.251 | a.148.1 | Arp2/3 complex 21 kDa subunit ARPC3 |
| View | Download | 0.249 | a.4.12 | TrpR-like |
| View | Download | 0.246 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.244 | a.60.13 | Putative methyltransferase TM0872, insert domain |
| View | Download | 0.244 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.242 | d.6.1 | Prion-like |
| View | Download | 0.241 | a.68.1 | Wiscott-Aldrich syndrome protein, WASP, C-terminal domain |
| View | Download | 0.239 | a.40.1 | Calponin-homology domain, CH-domain |
| View | Download | 0.238 | a.26.1 | 4-helical cytokines |
| View | Download | 0.238 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.236 | a.25.1 | Ferritin-like |
| View | Download | 0.231 | a.1.1 | Globin-like |
| View | Download | 0.226 | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.225 | a.152.1 | Antioxidant defence protein AhpD |
| View | Download | 0.224 | a.39.1 | EF-hand |
| View | Download | 0.224 | a.118.1 | ARM repeat |
| View | Download | 0.222 | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.221 | c.45.1 | (Phosphotyrosine protein) phosphatases II |
| View | Download | 0.218 | a.74.1 | Cyclin-like |
| View | Download | 0.212 | a.72.1 | Functional domain of the splicing factor Prp18 |
| View | Download | 0.211 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.209 | a.47.2 | t-snare proteins |
| View | Download | 0.208 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.206 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.204 | a.3.1 | Cytochrome c |
