| Protein: | VPS38 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 439 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS38.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..439] | [1..439] |
|
Region A: Residues: [1-128] |
1 11 21 31 41 51
| | | | | |
1 MKRFLLSRRQ RHLRMICFHN ISLFRANGDS KLIKEYGDGF IPCFFILESI RGELLYVSEV 60
61 QSGSLRKLSF QELPKLTGAS TMIVLKLVGL VPSDILCTIS SDKNGIIDDK WCVLCTYTID 120
121 LNKLQPIN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [129-314] |
1 11 21 31 41 51
| | | | | |
1 EDTVLITGTN APVLDLIDGS YTLAAEKIKP LKGLVSSHKR NISQVKIKFS LAYSSLLKLN 60
61 KLLEYSSQVH EEINEISSKI EDDFLSLKNQ NHWYMRTVQK SIETLEKEVL QRKKSKKNIE 120
121 MAQLESNDTI NHSKTELSLM SQDESINDDY GSIYSRFVQI KDRLDQLRFK KLYQLIGIFH 180
181 STDLFN
|
| Detection Method: | |
| Confidence: | 2.69897 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [315-439] |
1 11 21 31 41 51
| | | | | |
1 SDRGYIYFEK PSSVNDVINR LKLKPLNIEI LLRQAGESTK HREYVNSQLG YYLLFLHLTA 60
61 IQIFKAPLPY RLMYYGSTSV IDSQYPLYFT DQMISKHQAK LIKAIHYFNA DILQFKQILE 120
121 NYRPT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
