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View Structure Prediction Details

Protein: VRP1
Organism: Saccharomyces cerevisiae
Length: 817 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VRP1.

Description E-value Query
Range
Subject
Range
gi|39592304, gi|... - gi|39592304|emb|CAE75525.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi|187020927|em...
gi|157762282 - gi|157762282|ref|XP_001673483.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]
264.0 [0..2] [811..1070]
gi|33310026 - gi|33310026|gb|AAQ03243.1|AF414112_1 putative cell wall protein FLO11p [Candida albicans]
gi|68482880, gi|... - gi|68482880|ref|XP_714666.1| putative cell wall adhesin [Candida albicans SC5314], gi|46436253|gb|EA...
257.0 [0..5] [811..143]
gi|11385307 - gi|11385307|pir||A35175 mucin 1 precursor, repetitive splice form A [validated] - human
240.0 [0..4] [810..153]
SLAP1_CLOTH - Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 ...
237.0 [0..84] [731..1368]
gi|15828996 - gi|15828996|ref|NP_326356.1| lipoprotein VSAC (fragment) [Mycoplasma pulmonis UAB CTIP]
gi|14089939, gi|... - pir||E90577 lipoprotein vsaC [imported] - Mycoplasma pulmonis (strain UAB CTIP) (fragment), gi|14089...
229.0 [0..4] [784..59]
SLP1_CLOTM, SLAP... - (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein B) (S-layer protein 1), Cell sur...
225.0 [0..84] [715..762]
gi|37930527, gi|... - gi|37930527|gb|AAP74661.1| elicitor-like transglutaminase M81 [Phytophthora infestans], gi|23505399|...
224.0 [0..2] [810..684]
Muc12Ea-PA - The gene Mucin 12Ea is referred to in FlyBase by the symbol Dmel\Muc12Ea (CG32602, FBgn0052602). It ...
218.0 [0..5] [815..1489]
gi|145332667, gi... - gi|145332667|ref|NP_001078199.1| structural constituent of cell wall [Arabidopsis thaliana], gi|1199...
217.0 [0..6] [809..527]

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Predicted Domain #1
Region A:
Residues: [1-601]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAPAPPPP PPPPALGGSA PKPAKSVMQG RDALLGDIRK GMKLKKAETN DRSAPIVGGG  60
   61 VVSSASGSSG TVSSKGPSMS APPIPGMGAP QLGDILAGGI PKLKHINNNA STKPSPSASA 120
  121 PPIPGAVPSV AAPPIPNAPL SPAPAVPSIP SSSAPPIPDI PSSAAPPIPI VPSSPAPPLP 180
  181 LSGASAPKVP QNRPHMPSVR PAHRSHQRKS SNISLPSVSA PPLPSASLPT HVSNPPQAPP 240
  241 PPPTPTIGLD SKNIKPTDNA VSPPSSEVPA GGLPFLAEIN ARRSERGAVE GVSSTKIQTE 300
  301 NHKSPSQPPL PSSAPPIPTS HAPPLPPTAP PPPSLPNVTS APKKATSAPA PPPPPLPAAM 360
  361 SSASTNSVKA TPVPPTLAPP LPNTTSVPPN KASSMPAPPP PPPPPPGAFS TSSALSASSI 420
  421 PLAPLPPPPP PSVATSVPSA PPPPPTLTTN KPSASSKQSK ISSSSSSSAV TPGGPLPFLA 480
  481 EIQKKRDDRF VVGGDTGYTT QDKQEDVIGS SKDDNVRPSP ISPSINPPKQ SSQNGMSFLD 540
  541 EIESKLHKQT SSNAFNAPPP HTDAMAPPLP PSAPPPPITS LPTPTASGDD HTNDKSETVL 600
  601 G

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [602-700]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKAKAPALP GHVPPPPVPP VLSDDSKNNV PAASLLHDVL PSSNLEKPPS PPVAAAPPLP  60
   61 TFSAPSLPQQ SVSTSIPSPP PVAPTLSVRT ETESISKNP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [701-817]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKSPPPPPSP STMDTGTSNS PSKNLKQRLF STGGSTLQHK HNTHTNQPDV DVGRYTIGGS  60
   61 NSIVGAKSGN ERIVIDDSRF KWTNVSQMPK PRPFQNKTKL YPSGKGSSVP LDLTLFT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle