| Protein: | VRP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 817 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VRP1.
| Description | E-value | Query Range |
Subject Range |
|
|
264.0 | [0..2] | [811..1070] |
|
|
257.0 | [0..5] | [811..143] |
|
|
240.0 | [0..4] | [810..153] |
|
|
237.0 | [0..84] | [731..1368] |
|
|
229.0 | [0..4] | [784..59] |
|
|
225.0 | [0..84] | [715..762] |
|
|
224.0 | [0..2] | [810..684] |
|
|
218.0 | [0..5] | [815..1489] |
|
|
217.0 | [0..6] | [809..527] |
|
Region A: Residues: [1-601] |
1 11 21 31 41 51
| | | | | |
1 MAGAPAPPPP PPPPALGGSA PKPAKSVMQG RDALLGDIRK GMKLKKAETN DRSAPIVGGG 60
61 VVSSASGSSG TVSSKGPSMS APPIPGMGAP QLGDILAGGI PKLKHINNNA STKPSPSASA 120
121 PPIPGAVPSV AAPPIPNAPL SPAPAVPSIP SSSAPPIPDI PSSAAPPIPI VPSSPAPPLP 180
181 LSGASAPKVP QNRPHMPSVR PAHRSHQRKS SNISLPSVSA PPLPSASLPT HVSNPPQAPP 240
241 PPPTPTIGLD SKNIKPTDNA VSPPSSEVPA GGLPFLAEIN ARRSERGAVE GVSSTKIQTE 300
301 NHKSPSQPPL PSSAPPIPTS HAPPLPPTAP PPPSLPNVTS APKKATSAPA PPPPPLPAAM 360
361 SSASTNSVKA TPVPPTLAPP LPNTTSVPPN KASSMPAPPP PPPPPPGAFS TSSALSASSI 420
421 PLAPLPPPPP PSVATSVPSA PPPPPTLTTN KPSASSKQSK ISSSSSSSAV TPGGPLPFLA 480
481 EIQKKRDDRF VVGGDTGYTT QDKQEDVIGS SKDDNVRPSP ISPSINPPKQ SSQNGMSFLD 540
541 EIESKLHKQT SSNAFNAPPP HTDAMAPPLP PSAPPPPITS LPTPTASGDD HTNDKSETVL 600
601 G
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [602-700] |
1 11 21 31 41 51
| | | | | |
1 MKKAKAPALP GHVPPPPVPP VLSDDSKNNV PAASLLHDVL PSSNLEKPPS PPVAAAPPLP 60
61 TFSAPSLPQQ SVSTSIPSPP PVAPTLSVRT ETESISKNP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.536 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.444 | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.419 | a.152.1 | Antioxidant defence protein AhpD |
| View | Download | 0.393 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.369 | g.52.1 | Inhibitor of apoptosis (IAP) repeat |
| View | Download | 0.369 | g.52.1 | Inhibitor of apoptosis (IAP) repeat |
| View | Download | 0.364 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.272 | d.64.1 | eIF1-like |
| View | Download | 0.269 | a.39.1 | EF-hand |
|
Region A: Residues: [701-817] |
1 11 21 31 41 51
| | | | | |
1 TKSPPPPPSP STMDTGTSNS PSKNLKQRLF STGGSTLQHK HNTHTNQPDV DVGRYTIGGS 60
61 NSIVGAKSGN ERIVIDDSRF KWTNVSQMPK PRPFQNKTKL YPSGKGSSVP LDLTLFT
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
