| Protein: | YLR278C |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1341 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR278C.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1341] | [1..1341] |
|
|
0.0 | [38..748] | [16..664] |
|
|
0.0 | [35..761] | [62..828] |
|
|
0.0 | [25..697] | [23..630] |
|
Region A: Residues: [1-185] |
1 11 21 31 41 51
| | | | | |
1 MGRPRKNVSQ EKIQQLKREL ELAGNRTDVL LQDKKGRSRS CLLCRRRKQR CDHKLPSCTA 60
61 CLKAGIKCVQ PSKYSSSTSN SNTNNNTPTA GTVPPTPHPV IKRELQDSSI GAGAGAATSL 120
121 NDMTIIKPIS TSNSNVDAGD ANEFRKTIKS VTTNSNPNLM RQDKDQYTIF LEKKLKSLET 180
181 LLDLS
|
| Detection Method: |  |
| Confidence: | 14.522879 |
| Match: | 1pyiA_ |
| Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.226078362275538 | bayes_pls_golite062009 |
|
Region A: Residues: [186-264] |
1 11 21 31 41 51
| | | | | |
1 PGCNQYNYEL SQYKKVSHLF SNNTSDYSRP NSSNMVILPL PSPSNKPLEN TNNNGSNVNA 60
61 ATNDTSASTN NINNNNAIC
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 0.134879671454648 | bayes_pls_golite062009 |
|
Region A: Residues: [265-681] |
1 11 21 31 41 51
| | | | | |
1 QSASLLNDPL ETLDFTKCIF AKYNLKKEFL MYDPIFELNE KLSRSFLDTF FTRLQFKYPI 60
61 LDEQEIYTFY DHYLHNKILI PPSSPATSSA APPSNSHSYS EIEFHFLSGR MWLVFSISAY 120
121 LLMTTGKYKG FPPHRYFSTA IRHITKCGLH LNYVQQIELL TLLVLYIIRT DRDSLILYDI 180
181 IKDVMGISKK KLHLNQWYPN DPFANKKLRL FWCVYLLERM ICVAVGKPYT IKESEINLPL 240
241 FNNDSFYTKG VHAAAPSTND HGVQFINQSL KLRRIESQFV ETLQLLKNDS RSVKQSIDQL 300
301 PLVRKFFEDL EVWRKSYSTL DVKNFENETL KLYYYRSVRL LIQPYLEFFA PEDRLFRECQ 360
361 AAAGQICQLY KIFHQKTLNG HSTPAVHTVF VAGVTLIYCM WLARNFDDQR RKKLGDA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [682-1341] |
1 11 21 31 41 51
| | | | | |
1 SKHTRPLISA SLFSTMDDLR ACSVCLYVMT ERSNFARTFR DTFDQLMNAT VGNLIERCGP 60
61 DSSELIFMAS SVAKRTEPKN INDEANKAIS SGDTLHDSNS ANAANLSNSN DKNISHNGGM 120
121 PPAVARIFGK GQAEEHAGFV ENSQVDLAEQ EKFKKKQGVL EKTSVPKSLA HLLTKMDDRS 180
181 RISNSSMSYT TSSSSSSSSS SSSSTLSFPS SQEKNLKINV NNDNNGMTIS SVNREHNNNH 240
241 NNNNDNNNNN NNNNNNSNNN NNVNNNDNES NSRSTTNNSC NNGNNSQYVR NNNVTMENDV 300
301 ERPIQDQYIV KKPTNQTEFD WQVFQQQAFL QQQLAQHNLQ AYLSSLNTDT MTNRSPSKSS 360
361 SISTASSHSD PIPIAMTQSP TPYPQTSNML PQQHVSRPLP QQQREQPQQH ITSPQRFSES 420
421 NFTNQLNNGM INSNPLQSAI FSNHTSENKQ LRDVEESNFS TSPLRADYGN NIISSIPASF 480
481 TSNSIPVSVK QARNGSSSGD ILFSNGAHDM INNISTWTNN SVLDALNSKS ILQTIFPQSQ 540
541 EPSSLSMDKQ QQQHQQQNMC SENNVTANNF QQTQNDPSYN RNLFMMSNQE GVQYNLDETE 600
601 KNGPKTQVEA NTSANLHFDN VIPTVTNADI RKKRSNWDNM MTSGPVEDFW TINDDYGFLT 660
661
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [505-732] |
1 11 21 31 41 51
| | | | | |
1 FNNDSFYTKG VHAAAPSTND HGVQFINQSL KLRRIESQFV ETLQLLKNDS RSVKQSIDQL 60
61 PLVRKFFEDL EVWRKSYSTL DVKNFENETL KLYYYRSVRL LIQPYLEFFA PEDRLFRECQ 120
121 AAAGQICQLY KIFHQKTLNG HSTPAVHTVF VAGVTLIYCM WLARNFDDQR RKKLGDASKH 180
181 TRPLISASLF STMDDLRACS VCLYVMTERS NFARTFRDTF DQLMNATV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [733-1052] |
1 11 21 31 41 51
| | | | | |
1 GNLIERCGPD SSELIFMASS VAKRTEPKNI NDEANKAISS GDTLHDSNSA NAANLSNSND 60
61 KNISHNGGMP PAVARIFGKG QAEEHAGFVE NSQVDLAEQE KFKKKQGVLE KTSVPKSLAH 120
121 LLTKMDDRSR ISNSSMSYTT SSSSSSSSSS SSSTLSFPSS QEKNLKINVN NDNNGMTISS 180
181 VNREHNNNHN NNNDNNNNNN NNNNNSNNNN NVNNNDNESN SRSTTNNSCN NGNNSQYVRN 240
241 NNVTMENDVE RPIQDQYIVK KPTNQTEFDW QVFQQQAFLQ QQLAQHNLQA YLSSLNTDTM 300
301 TNRSPSKSSS ISTASSHSDP
|
| Detection Method: | |
| Confidence: | 3.26 |
| Match: | 1dv4A |
| Description: | 30S subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1053-1249] |
1 11 21 31 41 51
| | | | | |
1 IPIAMTQSPT PYPQTSNMLP QQHVSRPLPQ QQREQPQQHI TSPQRFSESN FTNQLNNGMI 60
61 NSNPLQSAIF SNHTSENKQL RDVEESNFST SPLRADYGNN IISSIPASFT SNSIPVSVKQ 120
121 ARNGSSSGDI LFSNGAHDMI NNISTWTNNS VLDALNSKSI LQTIFPQSQE PSSLSMDKQQ 180
181 QQHQQQNMCS ENNVTAN
|
| Detection Method: | |
| Confidence: | 16.0 |
| Match: | 1r17A |
| Description: | Crystal Structure Analysis of S.epidermidis adhesin SdrG binding to Fibrinogen (adhesin-ligand complex) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1250-1341] |
1 11 21 31 41 51
| | | | | |
1 NFQQTQNDPS YNRNLFMMSN QEGVQYNLDE TEKNGPKTQV EANTSANLHF DNVIPTVTNA 60
61 DIRKKRSNWD NMMTSGPVED FWTINDDYGF LT
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
