| Protein: | YSH1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 779 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YSH1.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..779] | [1..779] |
|
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0.0 | [4..778] | [7..683] |
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0.0 | [4..778] | [7..683] |
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0.0 | [1..777] | [29..711] |
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0.0 | [6..777] | [21..801] |
|
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0.0 | [5..778] | [18..688] |
|
|
0.0 | [3..730] | [88..717] |
|
Region A: Residues: [1-170] |
1 11 21 31 41 51
| | | | | |
1 MERTNTTTFK FFSLGGSNEV GRSCHILQYK GKTVMLDAGI HPAYQGLASL PFYDEFDLSK 60
61 VDILLISHFH LDHAASLPYV MQRTNFQGRV FMTHPTKAIY RWLLRDFVRV TSIGSSSSSM 120
121 GTKDEGLFSD EDLVDSFDKI ETVDYHSTVD VNGIKFTAFH AGHVLGAAMF
|
| Detection Method: |  |
| Confidence: | 14.522879 |
| Match: | 1smlA_ |
| Description: | Zn metallo-beta-lactamase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [171-431] |
1 11 21 31 41 51
| | | | | |
1 QIEIAGLRVL FTGDYSREVD RHLNSAEVPP LSSNVLIVES TFGTATHEPR LNRERKLTQL 60
61 IHSTVMRGGR VLLPVFALGR AQEIMLILDE YWSQHADELG GGQVPIFYAS NLAKKCMSVF 120
121 QTYVNMMNDD IRKKFRDSQT NPFIFKNISY LRNLEDFQDF GPSVMLASPG MLQSGLSRDL 180
181 LERWCPEDKN LVLITGYSIE GTMAKFIMLE PDTIPSINNP EITIPRRCQV EEISFAAHVD 240
241 FQENLEFIEK ISAPNIILVH G
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [432-529] |
1 11 21 31 41 51
| | | | | |
1 EANPMGRLKS ALLSNFASLK GTDNEVHVFN PRNCVEVDLE FQGVKVAKAV GNIVNEIYKE 60
61 ENVEIKEEIA AKIEPIKEEN EDNLDSQAEK GLVDEEEH
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.623 | 0.256 | mRNA cleavage | b.1.2 | Fibronectin type III |
| View | Download | 0.584 | 0.221 | mRNA cleavage | d.93.1 | SH2 domain |
| View | Download | 0.519 | 0.034 | mRNA cleavage | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.538 | 0.012 | mRNA cleavage | d.70.1 | Yest killer toxins |
| View | Download | 0.513 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.488 | N/A | N/A | d.93.1 | SH2 domain |
| View | Download | 0.463 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.459 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.457 | N/A | N/A | b.40.2 | Bacterial enterotoxins |
| View | Download | 0.455 | N/A | N/A | d.226.1 | GIY-YIG endonuclease |
| View | Download | 0.423 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.377 | N/A | N/A | d.94.2 | Putative transcriptional regulator TM1602, C-terminal domain |
| View | Download | 0.365 | N/A | N/A | d.10.1 | DNA-binding domain |
| View | Download | 0.359 | N/A | N/A | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
| View | Download | 0.355 | N/A | N/A | d.189.1 | PX domain |
| View | Download | 0.354 | N/A | N/A | b.4.1 | HSP40/DnaJ peptide-binding domain |
| View | Download | 0.343 | N/A | N/A | d.93.1 | SH2 domain |
| View | Download | 0.303 | N/A | N/A | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.302 | N/A | N/A | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.301 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.286 | N/A | N/A | d.93.1 | SH2 domain |
| View | Download | 0.273 | N/A | N/A | d.15.2 | CAD & PB1 domains |
| View | Download | 0.270 | N/A | N/A | d.15.1 | Ubiquitin-like |
| View | Download | 0.256 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.251 | N/A | N/A | d.106.1 | Sterol carrier protein, SCP |
| View | Download | 0.250 | N/A | N/A | d.186.1 | Head-to-tail joining protein W, gpW |
| View | Download | 0.240 | N/A | N/A | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.238 | N/A | N/A | d.58.35 | Pseudouridine synthase |
| View | Download | 0.237 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.237 | N/A | N/A | a.4.1 | Homeodomain-like |
| View | Download | 0.231 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.230 | N/A | N/A | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.229 | N/A | N/A | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.225 | N/A | N/A | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.223 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.222 | N/A | N/A | d.237.1 | Hypothetical protein YjiA, C-terminal domain |
| View | Download | 0.222 | N/A | N/A | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.220 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.213 | N/A | N/A | d.93.1 | SH2 domain |
| View | Download | 0.208 | N/A | N/A | a.24.15 | FAD-dependent thiol oxidase |
| View | Download | 0.204 | N/A | N/A | d.106.1 | Sterol carrier protein, SCP |
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Region A: Residues: [530-779] |
1 11 21 31 41 51
| | | | | |
1 KDIVVSGILV SDDKNFELDF LSLSDLREHH PDLSTTILRE RQSVRVNCKK ELIYWHILQM 60
61 FGEAEVLQDD DRVTNQEPKV KEESKDNLTN TGKLILQIMG DIKLTIVNTL AVVEWTQDLM 120
121 NDTVADSIIA ILMNVDSAPA SVKLSSHSCD DHDHNNVQSN AQGKIDEVER VKQISRLFKE 180
181 QFGDCFTLFL NKDEYASNKE ETITGVVTIG KSTAKIDFNN MKILECNSNP LKGRVESLLN 240
241 IGGNLVTPLC
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
