YRC Public Data Repository - Protein Structure Prediction

Protein:	NEJ1
Organism:	Saccharomyces cerevisiae
Length:	342 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NEJ1.

Description	E-value	Query Range	Subject Range
NEJ1_YEAST - Non-homologous end-joining protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NEJ... NEJ1 - Protein involved in regulation of nonhomologous end joining; interacts with DNA ligase IV components...	0.0	[1..342]	[1..342]

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Predicted Domain #1

Region A:
Residues: [1-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSELKGQQL SDAEWCVKKI NGEGNCLLLF LPMSSPTTIV MIVLVSLERL VPYVFKLSQT  60
   61 QLSQQCQSQG FTDSISLNLI KLKLMDILQA PQEINQIGLV DSNLVFSFDV SADITVSINS 120
  121 VPSHVTKDMF YMILQSLCML LLKLVNLSTQ YHYVQRDILN EKQKCLDFLL ISLRDLDGGS 180
  181 KVISQWAPEN SKNYESLQQC TDDDIIKKLL HKGKFQHQEF LADSLKTLLS LRNKFQDVSR 240
  241 FEESGELNKK ERVRFPAVNH FYNDDFELQA DPTNEARPNS RGKIKPKTDF KPKSRESSTS 300
  301 SQLRLENFSE SEATPEKTKS SSSLVEEYPQ KKRKFGKVRI KN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [189-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENSKNYESLQ QCTDDDIIKK LLHKGKFQHQ EFLADSLKTL LSLRNKFQDV SRFEESGELN  60
   61 KKERVRFPAV NHFYNDDFEL QADPTNEARP NSRGKIKPKT DFKPKSRESS TSSQLRLENF 120
  121 SESEATPEKT KSSSSLVEEY PQKKRKFGKV RIKN