YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: YLR241W
Organism: Saccharomyces cerevisiae
Length: 782 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR241W.

Description E-value Query
Range
Subject
Range
CSCL4_ARATH - CSC1-like protein At3g21620 OS=Arabidopsis thaliana GN=At3g21620 PE=2 SV=1
0.0 [27..771] [3..704]
gi|37537172, gi|... - gi|37537172|ref|NP_922889.1| unknown protein [Oryza sativa (japonica cultivar-group)], gi|31433691|g...
0.0 [27..771] [3..701]
gi|207342910 - gi|207342910|gb|EDZ70533.1| YLR241Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190405303 - gi|190405303|gb|EDV08570.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
CSC1_YEAST - Calcium permeable stress-gated cation channel 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...
YLR241W - Putative protein of unknown function, may be involved in detoxification
0.0 [1..782] [1..782]

Back

Predicted Domain #1
Region A:
Residues: [1-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSYIERLKS AASYLDTVPD EHHDFRKPTA KVVTTQLTIA TSLGIFALLS FSILLKKWPR  60
   61 LYASRRYKDD GNLRLPSWNQ SSLFGWLTVL YKIRDEQILE YAGLDAYVFL SFFKMCIKLL 120
  121 SIFCFFSVCV ISPVRYHFTG KIDDGNDDDD SESSLIHLVK RIVEGSGDGD NHSAPERTNV 180
  181 YLWMYVLFTY FFTFIAIKMA VAETKHVVST RQAYLGKQNT ITDRTIRLSG IPIELRDSEA 240
  241 LKTRIEQLKI GTVSSITICR EWGPLNKLFH CRKKILKNLE LKYSECPREL RTRQPYSENY 300
  301 HLLGNEQSGA VTHGENVPSS NNNDED

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [327-782]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TILYSQISLG ERPKMKIGYR GIFGKEVDAI EYLEQQLKFI DAEIIEARKQ HYSATPTAFV  60
   61 TMDSVANAQM AAQAVLDPRV HYFITRLAPA PHDIKWDHVC LSRKDRLTKV YSTTVFIGLS 120
  121 SLFLVIPVSY LATLLNLKTL SKFWPSVGQL LKDHQWAANI VTGLLPTYLF TLLNFGIPYF 180
  181 YEYLTSYQGL VSYSEEEISL VSKNFFYIFV NLFLVFTLAG TASNYWAYLS DTTKIAYQLA 240
  241 TSVKEFSLFY VDLIILQGIG MFPFKLLLVG SLIGFPLVKI KAKTPRQRNE LYNPPIFNFG 300
  301 LQLPQPILIL IITLIYSVMS TKILTSGLAY FIIGFYVYKY QLIFATDHLP HSTGKVWPLI 360
  361 FRRIIVGLLL FQLTMTGTLA GFEGGWVLSS CLFPLPVVTL CFLYDFEKNY LPLSKYIALS 420
  421 SIREYERDNS TVNSANEEES YAYPYAVSEL EGPMLD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 190.387216
Match: PF02714
Description: Domain of unknown function DUF221

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [515-588]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLVSYSEEEI SLVSKNFFYI FVNLFLVFTL AGTASNYWAY LSDTTKIAYQ LATSVKEFSL  60
   61 FYVDLIILQG IGMF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [589-782]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFKLLLVGSL IGFPLVKIKA KTPRQRNELY NPPIFNFGLQ LPQPILILII TLIYSVMSTK  60
   61 ILTSGLAYFI IGFYVYKYQL IFATDHLPHS TGKVWPLIFR RIIVGLLLFQ LTMTGTLAGF 120
  121 EGGWVLSSCL FPLPVVTLCF LYDFEKNYLP LSKYIALSSI REYERDNSTV NSANEEESYA 180
  181 YPYAVSELEG PMLD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle