| Protein: | HRD3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 833 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HRD3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..833] | [1..833] |
|
|
2.0E-66 | [51..728] | [159..768] |
|
|
3.0E-66 | [51..728] | [159..768] |
|
|
2.0E-65 | [51..728] | [155..764] |
|
|
1.0E-56 | [139..679] | [76..591] |
|
|
6.0E-51 | [154..698] | [14..563] |
|
Region A: Residues: [1-169] |
1 11 21 31 41 51
| | | | | |
1 MITLLLYLCV ICNAIVLIRA DSIADPWPEA RHLLNTIAKS RDPMKEAAME PNADEFVGFY 60
61 VPMDYSPRNE EKNYQSIWQN EITDSQRHIY ELLVQSSEQF NNSEATYTLS QIHLWSQYNF 120
121 PHNMTLAHKY LEKFNDLTHF TNHSAIFDLA VMYATGGCAS GNDQTVIPQ
|
| Detection Method: |  |
| Confidence: | 13.79 |
| Match: | 1fchA |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [170-240] |
1 11 21 31 41 51
| | | | | |
1 DSAKALLYYQ RAAQLGNLKA KQVLAYKYYS GFNVPRNFHK SLVLYRDIAE QLRKSYSRDE 60
61 WDIVFPYWES Y
|
| Detection Method: | |
| Confidence: | 13.79 |
| Match: | 1fchA |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [241-352] |
1 11 21 31 41 51
| | | | | |
1 NVRISDFESG LLGKGLNSVP SSTVRKRTTR PDIGSPFIAQ VNGVQMTLQI EPMGRFAFNG 60
61 NDGNINGDED DEDASERRII RIYYAALNDY KGTYSQSRNC ERAKNLLELT YK
|
| Detection Method: | |
| Confidence: | 13.79 |
| Match: | 1fchA |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [353-496] |
1 11 21 31 41 51
| | | | | |
1 EFQPHVDNLD PLQVFYYVRC LQLLGHMYFT GEGSSKPNIH MAEEILTTSL EISRRAQGPI 60
61 GRACIDLGLI NQYITNNISQ AISYYMKAMK TQANNGIVEF QLSKLATSFP EEKIGDPFNL 120
121 METAYLNGFI PAIYEFAVMI ESGM
|
| Detection Method: | |
| Confidence: | 10.39794 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [497-578] |
1 11 21 31 41 51
| | | | | |
1 NSKSSVENTA YLFKTFVDKN EAIMAPKLRT AFAALINDRS EVALWAYSQL AEQGYETAQV 60
61 SAAYLMYQLP YEFEDPPRTT DQ
|
| Detection Method: | |
| Confidence: | 10.39794 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [579-706] |
1 11 21 31 41 51
| | | | | |
1 RKTLAISYYT RAFKQGNIDA GVVAGDIYFQ MQNYSKAMAL YQGAALKYSI QAIWNLGYMH 60
61 EHGLGVNRDF HLAKRYYDQV SEHDHRFYLA SKLSVLKLHL KSWLTWITRE KVNYWKPSSP 120
121 LNPNEDTQ
|
| Detection Method: | |
| Confidence: | 10.39794 |
| Match: | 1fchA_ |
| Description: | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [707-833] |
1 11 21 31 41 51
| | | | | |
1 HSKTSWYKQL TKILQRMRHK EDSDKAAEDS HKHRTVVQNG ANHRGDDQEE ASEILGFQME 60
61 DLVTMGCILG IFLLSILMST LAARRGWNVR FNGAQLNANG NRQQEQQQQQ QAQGPPGWDF 120
121 NVQIFAI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
