YRC Public Data Repository - Protein Structure Prediction

Protein:	YKE2
Organism:	Saccharomyces cerevisiae
Length:	114 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YKE2.

Description	E-value	Query Range	Subject Range
gi\|7248489, gi\|9... - gi\|9634660\|ref\|NP_038334.1\| ORF33 [Streptococcus phage 7201], gi\|7248489\|gb\|AAF43525.1\|AF145054_34 O...	3.0E-21	[3..110]	[88..194]
gi\|7521452, gi\|9... - gi\|9632906\|ref\|NP_049935.1\| minor tail protein [Streptococcus phage Sfi19], pir\|\|T09271 probable tai...	4.0E-21	[3..110]	[88..194]
gi\|9632950, gi\|2... - gi\|9632950\|ref\|NP_049978.1\| putative minor tail protein [Streptococcus phage Sfi21], pir\|\|T09202 pro...	9.0E-21	[3..110]	[88..194]
CTTNBP2 - cortactin binding protein 2	9.0E-18	[1..110]	[125..252]
gi\|8925888 - gi\|8925888\|gb\|AAF81659.1\|AF199337_1 RIM binding protein 1A [Rattus norvegicus]	2.0E-17	[1..101]	[370..466]
gi\|21483594, gi\|... - gi\|21483594\|gb\|AAM52772.1\| SD09478p [Drosophila melanogaster], gi\|17426899\|emb\|CAD13484.1\| Eps-15 pr...	7.0E-17	[7..106]	[458..556]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELGAKYQQ LQNELEEFIV ARQKLETQLQ ENKIVNEEFD QLEEDTPVYK LTGNVLLPVE  60
   61 QSEARTNVDK RLEFIETEIT RCEKNIRDKQ EELEKMRSEL IKLNNTAAST GPGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.0
Match:	1fxkA_
Description:	Prefoldin beta subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits