YRC Public Data Repository - Protein Structure Prediction

Protein:	NOP56
Organism:	Saccharomyces cerevisiae
Length:	504 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOP56.

Description	E-value	Query Range	Subject Range
gi\|3288883 - gi\|3288883\|dbj\|BAA31260.1\| SAR DNA binding protein [Oryza sativa]	0.0	[7..497]	[3..483]
gi\|8218021 - gi\|8218021\|emb\|CAB92783.1\| nucleolar protein [Drosophila subobscura]	0.0	[4..470]	[3..464]
NOP56 - NOP56 ribonucleoprotein homolog (yeast)	0.0	[4..447]	[3..438]
gi\|14517412, gi\|... - gi\|6056371\|gb\|AAF02835.1\|AC009894_6 nucleolar protein [Arabidopsis thaliana], pir\|\|D96602 nucleolar ...	0.0	[6..443]	[4..439]
gi\|151941040 - gi\|151941040\|gb\|EDN59420.1\| U3 snoRNP protein [Saccharomyces cerevisiae YJM789] gi\|207342968 - gi\|207342968\|gb\|EDZ70575.1\| YLR197Wp-like protein [Saccharomyces cerevisiae AWRI1631] NOP56_YEAST - Nucleolar protein 56 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP56 PE=1 SV=1 NOP56 - Essential evolutionarily-conserved nucleolar protein component of the box C/D snoRNP complexes that ...	0.0	[1..446]	[1..446]
gi\|13623892 - gi\|13623892\|dbj\|BAB41076.1\| MAR-binding protein [Nicotiana tabacum]	0.0	[7..482]	[3..467]
NOP56_MACFA - Nucleolar protein 56 OS=Macaca fascicularis GN=NOP56 PE=2 SV=1	0.0	[4..490]	[3..501]
gi\|147903207, gi... - gi\|14799394\|emb\|CAC44272.1\| XNop56 protein [Xenopus laevis], gi\|147903207\|ref\|NP_001082151.1\| XNop56...	0.0	[4..435]	[3..428]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPIEYLLFE EPTGYAVFKV KLQQDDIGSR LKEVQEQIND FGAFTKLIEL VSFAPFKGAA  60
   61 EALENANDIS EGLVSESLKA ILDLNLPKA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [90-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSKKKNITLA ISDKNLGPSI KEEFPYVDCI SNELAQDLIR GVRLHGEKLF KG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [142-504]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQSGDLERAQ LGLGHAYSRA KVKFSVQKND NHIIQAIALL DQLDKDINTF AMRVKEWYGW  60
   61 HFPELAKLVP DNYTFAKLVL FIKDKASLND DSLHDLAALL NEDSGIAQRV IDNARISMGQ 120
  121 DISETDMENV CVFAQRVASL ADYRRQLYDY LCEKMHTVAP NLSELIGEVI GARLISHAGS 180
  181 LTNLSKQAAS TVQILGAEKA LFRALKTKGN TPKYGLIYHS GFISKASAKN KGRISRYLAN 240
  241 KCSMASRIDN YSEEPSNVFG SVLKKQVEQR LEFYNTGKPT LKNELAIQEA MELYNKDKPA 300
  301 AEVEETKEKE SSKKRKLEDD DEEKKEKKEK KSKKEKKEKK EKKDKKEKKD KKEKKDKKKK 360
  361 SKD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits