| Protein: | NOP56 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 504 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOP56.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [7..497] | [3..483] |
|
|
0.0 | [4..470] | [3..464] |
|
|
0.0 | [4..447] | [3..438] |
|
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0.0 | [6..443] | [4..439] |
|
|
0.0 | [1..446] | [1..446] |
|
|
0.0 | [7..482] | [3..467] |
|
|
0.0 | [4..490] | [3..501] |
|
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0.0 | [4..435] | [3..428] |
|
Region A: Residues: [1-89] |
1 11 21 31 41 51
| | | | | |
1 MAPIEYLLFE EPTGYAVFKV KLQQDDIGSR LKEVQEQIND FGAFTKLIEL VSFAPFKGAA 60
61 EALENANDIS EGLVSESLKA ILDLNLPKA
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [90-141] |
1 11 21 31 41 51
| | | | | |
1 SSKKKNITLA ISDKNLGPSI KEEFPYVDCI SNELAQDLIR GVRLHGEKLF KG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.348 | a.4.1 | Homeodomain-like |
| View | Download | 0.483 | a.5.2 | UBA-like |
| View | Download | 0.363 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.511 | d.58.38 | Urease metallochaperone UreE, C-terminal domain |
| View | Download | 0.354 | d.58.38 | Urease metallochaperone UreE, C-terminal domain |
| View | Download | 0.304 | d.58.38 | Urease metallochaperone UreE, C-terminal domain |
| View | Download | 0.289 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.266 | c.55.7 | Methylated DNA-protein cysteine methyltransferase domain |
| View | Download | 0.254 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.243 | d.75.1 | tRNA splicing endonuclease EdnA, N-terminal domain |
| View | Download | 0.241 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.241 | d.58.38 | Urease metallochaperone UreE, C-terminal domain |
| View | Download | 0.235 | a.5.2 | UBA-like |
| View | Download | 0.230 | a.140.3 | Rho termination factor, N-terminal domain |
| View | Download | 0.223 | a.4.1 | Homeodomain-like |
| View | Download | 0.223 | a.4.1 | Homeodomain-like |
| View | Download | 0.223 | a.4.1 | Homeodomain-like |
| View | Download | 0.221 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.212 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.209 | d.58.17 | Metal-binding domain |
| View | Download | 0.201 | a.4.1 | Homeodomain-like |
| View | Download | 0.200 | a.140.3 | Rho termination factor, N-terminal domain |
|
Region A: Residues: [142-504] |
1 11 21 31 41 51
| | | | | |
1 LQSGDLERAQ LGLGHAYSRA KVKFSVQKND NHIIQAIALL DQLDKDINTF AMRVKEWYGW 60
61 HFPELAKLVP DNYTFAKLVL FIKDKASLND DSLHDLAALL NEDSGIAQRV IDNARISMGQ 120
121 DISETDMENV CVFAQRVASL ADYRRQLYDY LCEKMHTVAP NLSELIGEVI GARLISHAGS 180
181 LTNLSKQAAS TVQILGAEKA LFRALKTKGN TPKYGLIYHS GFISKASAKN KGRISRYLAN 240
241 KCSMASRIDN YSEEPSNVFG SVLKKQVEQR LEFYNTGKPT LKNELAIQEA MELYNKDKPA 300
301 AEVEETKEKE SSKKRKLEDD DEEKKEKKEK KSKKEKKEKK EKKDKKEKKD KKEKKDKKKK 360
361 SKD
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
