YRC Public Data Repository - Protein Structure Prediction

Protein:	UPS1
Organism:	Saccharomyces cerevisiae
Length:	175 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UPS1.

Description	E-value	Query Range	Subject Range
gi\|57526905, gi\|... - gi\|57526905\|ref\|NP_001009636.1\| Preli [Rattus norvegicus], gi\|56789203\|gb\|AAH88284.1\| PRELI domain c...	262.0	[0..1]	[168..1]
gi\|74219629 - gi\|74219629\|dbj\|BAE29582.1\| unnamed protein product [Mus musculus]	261.0	[0..1]	[168..1]
gi\|73953256 - gi\|73953256\|ref\|XP_852403.1\| PREDICTED: similar to Px19-like protein (25 kDa protein of relevant evo...	261.0	[0..1]	[168..1]
gi\|109079906, gi... - gi\|109079908\|ref\|XP_001088735.1\| PREDICTED: px19-like protein isoform 4 [Macaca mulatta], gi\|1090799... ENSPTRT00000032492 - null	261.0	[0..1]	[168..1]
gi\|209736870 - gi\|209736870\|gb\|ACI69304.1\| PRELI domain-containing protein 1, mitochondrial precursor [Salmo salar] PRELID1 - PRELI domain containing 1 gi\|123995091, gi... - gi\|123995091\|gb\|ABM85147.1\| px19-like protein [synthetic construct], gi\|123980278\|gb\|ABM81968.1\| px1...	260.0	[0..1]	[168..1]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLLHKSTHI FPTDFASVSR AFFNRYPNPY SPHVLSIDTI SRNVDQEGNL RTTRLLKKSG  60
   61 KLPTWVKPFL RGITETWIIE VSVVNPANST MKTYTRNLDH TGIMKVEEYT TYQFDSATSS 120
  121 TIADSRVKFS SGFNMGIKSK VEDWSRTKFD ENVKKSRMGM AFVIQKLEEA RNPQF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	75.958607
Match:	PF04707.5
Description:	No description for PF04707.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.871	N/A	N/A	d.129.3	Bet v1-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits