YRC Public Data Repository - Protein Structure Prediction

Protein:	UPS1
Organism:	Saccharomyces cerevisiae
Length:	175 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UPS1.

Description	E-value	Query Range	Subject Range
gi\|57526905, gi\|... - gi\|57526905\|ref\|NP_001009636.1\| Preli [Rattus norvegicus], gi\|56789203\|gb\|AAH88284.1\| PRELI domain c...	262.0	[0..1]	[168..1]
gi\|74219629 - gi\|74219629\|dbj\|BAE29582.1\| unnamed protein product [Mus musculus]	261.0	[0..1]	[168..1]
gi\|73953256 - gi\|73953256\|ref\|XP_852403.1\| PREDICTED: similar to Px19-like protein (25 kDa protein of relevant evo...	261.0	[0..1]	[168..1]
gi\|109079906, gi... - gi\|109079908\|ref\|XP_001088735.1\| PREDICTED: px19-like protein isoform 4 [Macaca mulatta], gi\|1090799... ENSPTRT00000032492 - null	261.0	[0..1]	[168..1]
gi\|209736870 - gi\|209736870\|gb\|ACI69304.1\| PRELI domain-containing protein 1, mitochondrial precursor [Salmo salar] PRELID1 - PRELI domain containing 1 gi\|123995091, gi... - gi\|123995091\|gb\|ABM85147.1\| px19-like protein [synthetic construct], gi\|123980278\|gb\|ABM81968.1\| px1...	260.0	[0..1]	[168..1]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLLHKSTHI FPTDFASVSR AFFNRYPNPY SPHVLSIDTI SRNVDQEGNL RTTRLLKKSG  60
   61 KLPTWVKPFL RGITETWIIE VSVVNPANST MKTYTRNLDH TGIMKVEEYT TYQFDSATSS 120
  121 TIADSRVKFS SGFNMGIKSK VEDWSRTKFD ENVKKSRMGM AFVIQKLEEA RNPQF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	75.958607
Match:	PF04707.5
Description:	No description for PF04707.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.871	N/A	N/A	d.129.3	Bet v1-like
View	Download	0.838	N/A	N/A	d.129.3	Bet v1-like
View	Download	0.769	N/A	N/A	d.129.3	Bet v1-like
View	Download	0.736	N/A	N/A	d.129.3	Bet v1-like
View	Download	0.732	N/A	N/A	d.129.3	Bet v1-like
View	Download	0.683	N/A	N/A	d.129.3	Bet v1-like
View	Download	0.463	N/A	N/A	c.51.4	Maf/Ham1
View	Download	0.455	N/A	N/A	b.60.1	Lipocalins
View	Download	0.444	N/A	N/A	d.50.1	dsRNA-binding domain-like
View	Download	0.244	N/A	N/A	d.67.3	Ribosome recycling factor, RRF
View	Download	0.233	N/A	N/A	b.159.1	Description not found.
View	Download	0.226	N/A	N/A	d.227.1	OsmC-like
View	Download	0.219	N/A	N/A	b.29.1	Concanavalin A-like lectins/glucanases
View	Download	0.216	N/A	N/A	b.175.1	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits