| Protein: | SKG3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1026 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SKG3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1026] | [1..1026] |
|
|
7.0E-60 | [518..975] | [38..474] |
|
|
5.0E-57 | [518..966] | [38..483] |
|
Region A: Residues: [1-72] |
1 11 21 31 41 51
| | | | | |
1 MKRIFSGVKS PKLSAPPKVF KNDESPSTPS SPKFDQGLRS LSASASRLFS NSISTPGSPT 60
61 LDLPQEHSIN GD
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.343 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.388 | a.4.1 | Homeodomain-like |
| View | Download | 0.367 | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.337 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.388 | a.4.1 | Homeodomain-like |
| View | Download | 0.367 | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.343 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.339 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.337 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.324 | a.4.1 | Homeodomain-like |
| View | Download | 0.290 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.271 | a.4.1 | Homeodomain-like |
| View | Download | 0.246 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.215 | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.214 | a.64.1 | Saposin |
|
Region A: Residues: [73-278] |
1 11 21 31 41 51
| | | | | |
1 ISPELVPIVT LLSAQAHRRY HYGIFLILHD LKTDGTPAAR QWEECYGVLL GTQLALWDAK 60
61 ELSDSKNNKN TSTMKKAASR PSFINFTDAS VRSLDANDQV IIASENEKTK KDLDNVLVVS 120
121 TTLKNRYFLK FKNSKSFKTW NAAIRLSLFE FTALQEAYTG SFLSSRGVKL GDIKVVMADT 180
181 KFTYEDWVSV RFGTGMPWKR CYAVIS
|
| Detection Method: | |
| Confidence: | 8.356547 |
| Match: | PF00169 |
| Description: | PH domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 2.37468867147476 | bayes_pls_golite062009 |
| protein binding | 1.98056222560389 | bayes_pls_golite062009 |
|
Region A: Residues: [279-350] |
1 11 21 31 41 51
| | | | | |
1 PQSGKKKKNS KGSICFYENN KKTKKSNIMT TVVDARALYA VYPSSPILID TSTIIKLEGF 60
61 VSFDKSEEPQ ET
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.333 | a.3.1 | Cytochrome c |
| View | Download | 0.407 | d.58.17 | Metal-binding domain |
| View | Download | 0.342 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.446 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.344 | a.135.1 | Tetraspanin |
| View | Download | 0.268 | d.64.1 | eIF1-like |
| View | Download | 0.265 | a.2.9 | C-terminal UvrC-binding domain of UvrB |
| View | Download | 0.203 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [351-451] |
1 11 21 31 41 51
| | | | | |
1 NLFIMPEKHQ GVPGYDTIIR FLIPAMNAFY LYGRPKGLIA NRTDPDSLLF ALPTLPHIYY 60
61 LQVDDVLSLT KDKNYIHWSA ADWRNNIVQV LQKKLSKGYK G
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.466 | 0.964 | cellular bud | a.39.1 | EF-hand |
| View | Download | 0.449 | 0.002 | cellular bud | a.156.1 | S13-like H2TH domain |
| View | Download | 0.804 | 0.002 | cellular bud | a.158.1 | F-box domain |
| View | Download | 0.517 | 0.001 | cellular bud | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.760 | N/A | N/A | a.39.4 | Hypothetical protein MTH865 |
| View | Download | 0.349 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.327 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.319 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.294 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.293 | N/A | N/A | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.292 | N/A | N/A | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.286 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.280 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.273 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.262 | N/A | N/A | d.110.4 | SNARE-like |
| View | Download | 0.254 | N/A | N/A | a.18.1 | T4 endonuclease V |
| View | Download | 0.254 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.251 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.251 | N/A | N/A | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.246 | N/A | N/A | d.110.1 | Profilin (actin-binding protein) |
| View | Download | 0.246 | N/A | N/A | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.245 | N/A | N/A | d.110.1 | Profilin (actin-binding protein) |
| View | Download | 0.225 | N/A | N/A | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.221 | N/A | N/A | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.219 | N/A | N/A | a.112.1 | Description not found. |
| View | Download | 0.210 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.208 | N/A | N/A | d.93.1 | SH2 domain |
|
Region A: Residues: [452-1026] |
1 11 21 31 41 51
| | | | | |
1 CGNKTVSVSS GMMKSPAISS AELFEGYDSL PERQMESPQK SKMKSPTLAS TDDINSASAS 60
61 VNSHATSVKQ TELFVTDNSS KINDSVSAQS SVTTNFKDTF TTPMTSGMLN HENSERSFGS 120
121 GLKLKITDSN LENMEDVEAK SANEFSTTPE DKHIHLANAA ELSALYDKYS TSPFGKSEAN 180
181 SSPKPQKLEV KDRSKNENRS PYERYVGTSA ESKTFEIGNV RESKSTINTS LSSPLRVEDS 240
241 RRSKNEDLGS LKEFEELSQK ISNMGMANIS SEALSDTAEN SSFVTDLNLN INNSSSVNLN 300
301 EEQRVPDFGE ENVFDPDYME QNQMLETESR YTTDEFDFSD NQDAASSNYS NGQTNRTVTE 360
361 TLSASDRNDK IPHSSLFTNL NQLTSNGGNY QDREDFSGDQ INKPQQSQPL HVKGPQTSSF 420
421 GYRNSSANSS QPQAPYPVGR PLGKIRTGPL TVQPMQQGGN SSMYSFQSSQ HRFHSSQQRQ 480
481 NQSLSFRNNT YGSGNNQNTF HPSPQLQQQP QNMRYLNNKL PINDRSPIPQ TQHHVPDGRP 540
541 SLHINTTNRT NPLTAQSGFS QFMPPNSTST NPYSS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [741-856] |
1 11 21 31 41 51
| | | | | |
1 NINNSSSVNL NEEQRVPDFG EENVFDPDYM EQNQMLETES RYTTDEFDFS DNQDAASSNY 60
61 SNGQTNRTVT ETLSASDRND KIPHSSLFTN LNQLTSNGGN YQDREDFSGD QINKPQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [857-1026] |
1 11 21 31 41 51
| | | | | |
1 QSQPLHVKGP QTSSFGYRNS SANSSQPQAP YPVGRPLGKI RTGPLTVQPM QQGGNSSMYS 60
61 FQSSQHRFHS SQQRQNQSLS FRNNTYGSGN NQNTFHPSPQ LQQQPQNMRY LNNKLPINDR 120
121 SPIPQTQHHV PDGRPSLHIN TTNRTNPLTA QSGFSQFMPP NSTSTNPYSS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
