| Protein: | RFX1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 811 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RFX1.
| Description | E-value | Query Range |
Subject Range |
|
|
653.0 | [0..49] | [811..9] |
|
|
639.0 | [0..160] | [801..51] |
|
|
636.0 | [0..160] | [801..51] |
|
|
629.0 | [0..160] | [801..51] |
|
|
626.0 | [0..160] | [801..51] |
|
|
622.0 | [0..160] | [801..51] |
|
Region A: Residues: [1-230] |
1 11 21 31 41 51
| | | | | |
1 MVIFKERKPT ENLFTRKIPA KYFIFSPSFL SVHYFEFYLP MSGDNNIEPT SRGSNDNSNG 60
61 PSNGSSVNSN RYSLNAPKYS SQPPPASHTY LPPMSVNIPP IASKSSSIYS LLHQSSPRPE 120
121 TPNPILPPLI GSGPGSHKPS PTPTQPPAQP ATQRQPATYS VYPASISLNR SNSSAYPLSF 180
181 KSEETLNNNP PTAAKRTNTF PSIPSSTKKQ KTSQEKRISS ISRRNTQEII
|
| Detection Method: |  |
| Confidence: | 12.57 |
| Match: | |
| Description: | No description for 1deqA was found. |
|
Region A: Residues: [231-284] |
1 11 21 31 41 51
| | | | | |
1 AKQIAENNKS KTIEEYAQIV KHAEIKVLSM DSQNTSKAAL QLAEQNRERE RQVF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.641 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.641 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.613 | a.140.2 | SAP domain |
| View | Download | 0.587 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.574 | a.30.1 | ROP protein |
| View | Download | 0.566 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.560 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.560 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.555 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
|
Region A: Residues: [285-360] |
1 11 21 31 41 51
| | | | | |
1 ALLWLMKNCK SQHDSYVPRG KIFAQYASSC SQNNLKPLSQ ASLGKLIRTV FPDLTTRRLG 60
61 MRGQSKYHYC GLKLTV
|
| Detection Method: | |
| Confidence: | 156.927757 |
| Match: | 1dp7P |
| Description: | Class II MHC transcription factor RFX1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [361-557] |
1 11 21 31 41 51
| | | | | |
1 NESGSVSLNN NNASLSLVHN NDPISPLSSP SPSSPSPQVP NVSSPFSLNR KSLSRTGSPV 60
61 KQSSNDNPNE PELESQHPNE TEANKLDSLP PAANNPTGTL SSDELTFTHD LIEKVFNCND 120
121 KLSDNYNTQI LSNTEHPLLT SYKLDFPKIP AGVLPTDTDS DVISSLESLY HIHCNSVYEC 180
181 IKFLKSDNIS NALFFSN
|
| Detection Method: | |
| Confidence: | 11.48 |
| Match: | |
| Description: | No description for 1i3qA was found. |
|
Region A: Residues: [558-666] |
1 11 21 31 41 51
| | | | | |
1 SNSISPTMFN LFISEPLIDW VTKCDLITYT GLIKFFSQFI IHSNEISDSI IQKLESMIKL 60
61 LPEQINKAVL ELPKALVQRK LSIINNFTKL VKKLIKLLKF ILNFLKSFP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.983 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.983 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.982 | a.47.2 | t-snare proteins |
| View | Download | 0.982 | a.47.2 | t-snare proteins |
| View | Download | 0.977 | a.7.12 | Description not found. |
| View | Download | 0.970 | a.7.16 | Description not found. |
| View | Download | 0.970 | a.216.1 | Description not found. |
| View | Download | 0.968 | a.7.7 | BAG domain |
| View | Download | 0.968 | a.7.7 | BAG domain |
| View | Download | 0.964 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
|
Region A: Residues: [667-811] |
1 11 21 31 41 51
| | | | | |
1 IFKSGMNNDW KNIVNLDDIL EMMINEDDTN SETNTIMQHL QGFCQVFVTK FLNSSMSVSN 60
61 DPSVSIECKS LNEMIKDFCS FISLQSKFSC LKLIDCSTRF RNAIIGDISL KSNENLLSWL 120
121 FLNNVMGQLL NYCFEVMKFV NGLKV
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.664 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.618 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.618 | N/A | N/A | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.601 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.601 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.538 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.538 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.523 | N/A | N/A | a.29.13 | Description not found. |
| View | Download | 0.386 | N/A | N/A | a.24.1 | Apolipoprotein |
