YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: APS1
Organism: Saccharomyces cerevisiae
Length: 156 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APS1.

Description E-value Query
Range
Subject
Range
gi|4741996 - gi|4741996|gb|AAD28793.1|AF146688_2 19 kDa Golgi adaptor protein adaptin [Takifugu rubripes]
gi|47230618 - gi|47230618|emb|CAF99811.1| unnamed protein product [Tetraodon nigroviridis]
8.0E-39 [4..155] [1..150]
gi|12005732 - gi|12005732|gb|AAG44595.1|AF251295_1 DC22 [Homo sapiens]
2.0E-38 [5..155] [25..174]
gi|11999126 - gi|11999126|gb|AAG43051.1|AF228054_1 clathrin-associated adaptor complex AP-1 small chain sigma1 [Dr...
7.0E-38 [3..153] [1..149]
gi|108711413, gi... - gi|34897116|ref|NP_909904.1| putative clathrin assembly protein [Oryza sativa], gi|14718316|gb|AAK72...
gi|17149112 - gi|17149112|gb|AAL35902.1|AF443602_1 clathrin assembly protein AP19-like protein [Oryza sativa]
2.0E-37 [1..154] [20..171]
gi|1762309 - gi|1762309|gb|AAB39510.1| AP-1 Golgi-related complex component; clathrin coated vesicles; clathrin a...
3.0E-37 [3..154] [1..150]
gi|39593058, gi|... - gi|39593058|emb|CAE64527.1| Hypothetical protein CBG09266 [Caenorhabditis briggsae], gi|187031989|em...
aps-1 - clathrin coat assembly protein status:Confirmed UniProt:O16369 protein_id:AAB65902.1
gi|157763874 - gi|157763874|ref|XP_001674280.1| Hypothetical protein CBG09266 [Caenorhabditis briggsae AF16]
4.0E-37 [3..152] [1..148]
gi|113931322, gi... - gi|89268919|emb|CAJ82923.1| adaptor-related protein complex 1, sigma 2 subunit [Xenopus tropicalis],...
gi|109511709, gi... - gi|109511709|ref|XP_001068004.1| PREDICTED: similar to AP-1 complex subunit sigma-2 (Adapter-related...
gi|109130007 - gi|109130007|ref|XP_001102083.1| PREDICTED: similar to AP-1 complex subunit sigma-2 (Adapter-related...
tr|F6SFB5|F6SFB5... - AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=4 SV=1
AP1S2_MOUSE - AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap1s2 PE=1 SV=1
gi|542166448|ref... - PREDICTED: AP-1 complex subunit sigma-2 isoform X1 [Zonotrichia albicollis]
AP1S2_BOVIN - AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S2 PE=2 SV=1
6.0E-37 [4..151] [1..146]

Back

Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQLKYLLLV SRQGKIRLKK WYTAMSAGEK AKIVKDLTPT ILARKPKMCN IIEYNDHKVV  60
   61 YKRYASLYFI VGMTPDVDNE LLTLEIIH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 297.165202
Match: 1gw5S_
Description: Sigma2 adaptin (clathrin coat assembly protein AP17)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [89-156]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFVETMDTYF GNVCELDIIF NFSKVYDILN EMIMCDGSIA ESSRKEVLHH VTVMDTMESN  60
   61 DNLERVLS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 297.165202
Match: 1gw5S_
Description: Sigma2 adaptin (clathrin coat assembly protein AP17)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle