YRC Public Data Repository - Protein Structure Prediction

Protein:	YLR164W
Organism:	Saccharomyces cerevisiae
Length:	168 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR164W.

Description	E-value	Query Range	Subject Range
SHH4_YEAST - Mitochondrial inner membrane protein SHH4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... YLR164W - Mitochondrial inner membrane of unknown function; similar to Tim18p and Sdh4p; expression induced by...	8.0E-63	[1..168]	[1..168]
sdh4 - TIM22 inner membrane protein import complex anchor subunit Tim18 DHSD_SCHPO - Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Schizosaccharomyce...	7.0E-48	[20..160]	[46..186]
DHSD_BOVIN - (Q95123) Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial precursor (C...	9.0E-41	[35..159]	[38..157]
gi\|28194393 - gi\|28194393\|gb\|AAO33541.1\|AF475093_1 liver regeneration-related protein 1 [Rattus norvegicus] gi\|12850891 - gi\|12850891\|dbj\|BAB28885.1\| unnamed protein product [Mus musculus]	2.0E-38	[34..159]	[38..158]
DHSD_ASCSU - Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Ascaris suum PE=1 ...	5.0E-38	[18..159]	[19..155]
SDHD - succinate dehydrogenase complex, subunit D, integral membrane protein gi\|123999468, gi... - gi\|61361457\|gb\|AAX42051.1\| succinate dehydrogenase complex subunit D integral membrane protein [synt...	7.0E-37	[35..159]	[39..158]
sdhd-1 - status:Confirmed UniProt:O62215 protein_id:CAB04259.1	7.0E-32	[29..157]	[17..142]

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Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTKFLKPL CRIRAFHTSI ARSFTIPFLP KIPQKPGGVS GTANDSSYMP PESRAQGSYH  60
   61 WIVERGLSLA VLPLIAVPLV TTGPISTFTD TFLSLVLLGH CHIGFQSCII DYISERVYGK 120
  121 VHHYAMYLLS LGSFLSFVGI YKLESQEAGL IASLKSLWDN KPVEKKRQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits