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View Structure Prediction Details

Protein: YLR164W
Organism: Saccharomyces cerevisiae
Length: 168 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR164W.

Description E-value Query
Range
Subject
Range
SHH4_YEAST - Mitochondrial inner membrane protein SHH4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...
YLR164W - Mitochondrial inner membrane of unknown function; similar to Tim18p and Sdh4p; expression induced by...
8.0E-63 [1..168] [1..168]
sdh4 - TIM22 inner membrane protein import complex anchor subunit Tim18
DHSD_SCHPO - Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Schizosaccharomyce...
7.0E-48 [20..160] [46..186]
DHSD_BOVIN - (Q95123) Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial precursor (C...
9.0E-41 [35..159] [38..157]
gi|28194393 - gi|28194393|gb|AAO33541.1|AF475093_1 liver regeneration-related protein 1 [Rattus norvegicus]
gi|12850891 - gi|12850891|dbj|BAB28885.1| unnamed protein product [Mus musculus]
2.0E-38 [34..159] [38..158]
DHSD_ASCSU - Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial OS=Ascaris suum PE=1 ...
5.0E-38 [18..159] [19..155]
SDHD - succinate dehydrogenase complex, subunit D, integral membrane protein
gi|123999468, gi... - gi|61361457|gb|AAX42051.1| succinate dehydrogenase complex subunit D integral membrane protein [synt...
7.0E-37 [35..159] [39..158]
sdhd-1 - status:Confirmed UniProt:O62215 protein_id:CAB04259.1
7.0E-32 [29..157] [17..142]

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Predicted Domain #1
Region A:
Residues: [1-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTKFLKPL CRIRAFHTSI ARSFTIPFLP KIPQKPGGVS GTANDSSYMP PESRAQGSYH  60
   61 WIVERGLSLA VLPLIAVPLV TTGPISTFTD TFLSLVLLGH CHIGFQSCII DYISERVYGK 120
  121 VHHYAMYLLS LGSFLSFVGI YKLESQEAGL IASLKSLWDN KPVEKKRQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.537 c.37.1 P-loop containing nucleoside triphosphate hydrolases
View Download 0.535 d.104.1 Class II aaRS and biotin synthetases
View Download 0.370 a.74.1 Cyclin-like
View Download 0.405 b.34.9 Tudor/PWWP/MBT
View Download 0.617 a.24.10 Histidine-containing phosphotransfer domain, HPT domain
View Download 0.332 f.1.4 Bcl-2 inhibitors of programmed cell death
View Download 0.332 a.26.1 4-helical cytokines
View Download 0.316 f.13.1 Family A G protein-coupled receptor-like
View Download 0.301 c.78.2 Aspartate/glutamate racemase
View Download 0.286 a.63.1 Apolipophorin-III
View Download 0.283 c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.239 a.87.1 DBL homology domain (DH-domain)
View Download 0.234 f.25.1 Cytochrome c oxidase subunit III-like
View Download 0.234 a.26.1 4-helical cytokines
View Download 0.223 c.50.1 Macro domain-like
View Download 0.215 c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.214 d.108.1 Acyl-CoA N-acyltransferases (Nat)
View Download 0.210 f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.206 c.26.2 Adenine nucleotide alpha hydrolases-like
View Download 0.204 a.45.1 Glutathione S-transferase (GST), C-terminal domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle