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View Structure Prediction Details

Protein: RNH203
Organism: Saccharomyces cerevisiae
Length: 110 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNH203.

Description E-value Query
Range
Subject
Range
gi|45270308 - gi|45270308|gb|AAS56535.1| YLR154C [Saccharomyces cerevisiae]
214.0 [0..1] [110..1]

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Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKDAVNLDA YTVSFMPFYT EYQGPTEEFK DYKFEDTIYF RGKELKREKS ATPSSSDNTT  60
   61 SNTFSNGAIL SGNTITGKIV SVNNYEREGT DRNELARLQE LISLIDVINQ 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 19.275724
Match: PF08615.2
Description: No description for PF08615.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.609 N/A N/A a.13.1 alpha-2-Macroglobulin receptor associated protein (RAP) domain 1
View Download 0.455 N/A N/A c.126.1 Description not found.
View Download 0.444 N/A N/A a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.444 N/A N/A a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.429 N/A N/A c.30.1 PreATP-grasp domain
View Download 0.416 N/A N/A b.140.1 Description not found.
View Download 0.409 N/A N/A a.60.9 lambda integrase-like, N-terminal domain
View Download 0.403 N/A N/A b.34.9 Tudor/PWWP/MBT
View Download 0.364 N/A N/A c.47.2 RNA 3'-terminal phosphate cyclase, RPTC, insert domain
View Download 0.226 N/A N/A b.1.1 Immunoglobulin
View Download 0.215 N/A N/A a.36.1 Signal peptide-binding domain
View Download 0.205 N/A N/A a.7.8 GAT domain
View Download 0.203 N/A N/A d.87.2 CO dehydrogenase flavoprotein C-terminal domain-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle