YRC Public Data Repository - Protein Structure Prediction

Protein:	RMP1
Organism:	Saccharomyces cerevisiae
Length:	201 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RMP1.

Description	E-value	Query Range	Subject Range
gi\|49528861, gi\|... - gi\|50294271\|ref\|XP_449547.1\| hypothetical protein CAGL0M04587g [Candida glabrata CBS138], gi\|4952886... gi\|49528861 - gi\|49528861\|emb\|CAG62523.1\| unnamed protein product [Candida glabrata]	118.0	[0..11]	[201..11]
gi\|49642949, gi\|... - gi\|50307671\|ref\|XP_453815.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642949\|emb\|CAH0091... gi\|49642949 - gi\|49642949\|emb\|CAH00911.1\| KLLA0D17072p [Kluyveromyces lactis]	109.0	[0..7]	[201..11]
gi\|44985707 - gi\|44985707\|gb\|AAS54331.1\| AGL160Wp [Ashbya gossypii ATCC 10895] gi\|45200937, gi\|... - gi\|45200937\|ref\|NP_986507.1\| AGL160Wp [Ashbya gossypii ATCC 10895], gi\|44985707\|gb\|AAS54331.1\| AGL16...	108.0	[0..3]	[154..14]
gi\|50422883, gi\|... - gi\|50422883\|ref\|XP_460019.1\| hypothetical protein DEHA0E17193g [Debaryomyces hansenii CBS767], gi\|49...	84.0	[0..11]	[165..13]
gi\|49649424 - gi\|49649424\|emb\|CAG79136.1\| YALI0E04741p [Yarrowia lipolytica] gi\|50552161, gi\|... - gi\|50552161\|ref\|XP_503555.1\| YALI0E04741p [Yarrowia lipolytica], gi\|49649424\|emb\|CAG79136.1\| unnamed...	60.0	[0..14]	[161..42]
gi\|68467478, gi\|... - gi\|68467478\|ref\|XP_722172.1\| hypothetical protein CaO19.4962 [Candida albicans SC5314], gi\|68467245\|... orf19.12427, orf... - orf19.4962 CGDID:CAL0006360 Assembly 19, Contig19-10216 (122280, 121078) CDS, reverse complemented, ...	59.0	[0..6]	[115..29]
gi\|70984058, gi\|... - gi\|70984058\|ref\|XP_747550.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668451...	50.0	[0..15]	[200..10]
gi\|111062232 - gi\|111062232\|gb\|EAT83352.1\| predicted protein [Phaeosphaeria nodorum SN15]	47.0	[0..24]	[112..38]
gi\|115398448, gi... - gi\|115398448\|ref\|XP_001214813.1\| predicted protein [Aspergillus terreus NIH2624], gi\|114191696\|gb\|EA...	47.0	[0..15]	[192..10]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEMDNVIRS LEQEYRLILL LNHRNKNQHR AASWYGSFNE MKRNCGQIIT LFSSRRLQAK  60
   61 RLKDVEWVKL HRLLQRALFR QLKRWYWQFN GVIALGQFVT LGCTLVTLLA NVRALYMRLW 120
  121 EINETEFIRC GCLIKNLPRT KAKSVVNDVE ELGEIIDEDI GNNVQENELV ITSIPKPLTE 180
  181 NCKKKKKRKK KNKSAIDGIF G

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.838	N/A	N/A	f.35.1	Multidrug efflux transporter AcrB transmembrane domain
View	Download	0.838	N/A	N/A	f.35.1	Multidrug efflux transporter AcrB transmembrane domain
View	Download	0.697	N/A	N/A	a.202.1	Description not found.
View	Download	0.595	N/A	N/A	f.35.1	Multidrug efflux transporter AcrB transmembrane domain
View	Download	0.595	N/A	N/A	f.35.1	Multidrug efflux transporter AcrB transmembrane domain
View	Download	0.579	N/A	N/A	f.35.1	Multidrug efflux transporter AcrB transmembrane domain
View	Download	0.579	N/A	N/A	f.35.1	Multidrug efflux transporter AcrB transmembrane domain
View	Download	0.567	N/A	N/A	d.96.1	Tetrahydrobiopterin biosynthesis enzymes-like
View	Download	0.332	N/A	N/A	f.35.1	Multidrug efflux transporter AcrB transmembrane domain
View	Download	0.301	N/A	N/A	d.123.1	Sporulation responce regulatory protein Spo0B

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits