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View Structure Prediction Details

Protein: NHA1
Organism: Saccharomyces cerevisiae
Length: 985 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NHA1.

Description E-value Query
Range
Subject
Range
NHA1 - Na+/H+ antiporter involved in sodium and potassium efflux through the plasma membrane; required for ...
gi|190406167 - gi|190406167|gb|EDV09434.1| Na(+)/H(+) antiporter [Saccharomyces cerevisiae RM11-1a]
NAH1_YEAST - Na(+)/H(+) antiporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NHA1 PE=1 SV=1
0.0 [1..985] [1..985]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [4..772] [89..885]
gi|1655702, gi|1... - gi|1655702|emb|CAA69925.1| Na+/H+ antiporter [Xenopus laevis], gi|147903024|ref|NP_001081553.1| Na+/...
0.0 [7..693] [75..763]
gi|178753 - gi|178753|gb|AAB59460.1| Na/H antiporter [Homo sapiens]
0.0 [4..702] [89..813]
SL9A1_MOUSE - Sodium/hydrogen exchanger 1 OS=Mus musculus GN=Slc9a1 PE=1 SV=1
0.0 [4..702] [93..818]
NAH2_ZYGRO - Na(+)/H(+) antiporter 2 OS=Zygosaccharomyces rouxii GN=SOD22 PE=3 SV=1
0.0 [4..878] [3..788]
SL9A1_RAT - Sodium/hydrogen exchanger 1 OS=Rattus norvegicus GN=Slc9a1 PE=1 SV=2
0.0 [4..702] [93..818]
SL9A1_RABIT - Sodium/hydrogen exchanger 1 OS=Oryctolagus cuniculus GN=SLC9A1 PE=2 SV=1
0.0 [4..702] [89..814]

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Predicted Domain #1
Region A:
Residues: [1-321]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIWEQLEVS KAHVAYACVG VFSSIFSLVS LYVKEKLYIG ESTVAGIFGL IVGPVCLNWF  60
   61 NPLKWGNSDS ITLEITRIVL CLQIFAVAVE LPRKYMLKHW VSVTMLLLPV MTAGWLIIGL 120
  121 FVWILIPGLN FSASLLISAC ITATDPILAQ SVVSGKFAQR VPGHLRNLLS AESGCNDGMA 180
  181 FPFLFLSMNL ILHPGNGREI VKDWICVTIL YECLFGCLLG CFIGYVGRIT IRFAEKKNII 240
  241 DRESFLAFYV VLAFMCAGFG SILGVDDLLV SFAAGATFAW DGWFSQKTQE SNVSTVIDLL 300
  301 LNYAYFIYFG AIIPWSQFNN G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.69897
Match: 1fftA_
Description: Cytochrome O ubiquinol oxidase, subunit I
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [322-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIGTNVWRLI ILSIVVIFLR RIPAVMILRP LIPDIKSWRE ALFVGHFGPI GVGAIFAAIL  60
   61 ARGELESTFS DEPTPLNVVP SKE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [405-985]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESKHWQLIAC IWPITCFFIV TSIIVHGSSV AIITLGRHLN TITLTKTFTT HTTNGDNGKS  60
   61 SWMQRLPSLD KAGRSFSLHR MDTQMTLSGD EGEAEEGGGR KGLAGGEDEE GLNNDQIGSV 120
  121 ATSGIPARPA GGMPRRRKLS RKEKRLNRRQ KLRNKGREIF SSRSKNEMYD DDELNDLGRE 180
  181 RLQKEKEARA ATFALSTAVN TQRNEEIGMG GDEEEDEYTP EKEYSDNYNN TPSFESSERS 240
  241 SSLRGRTYVP RNRYDGEETE SEIESEDEME NESERSMASS EERRIRKMKE EEMKPGTAYL 300
  301 DGNRMIIENK QGEILNQVDI EDRNEARDDE VSVDSTAHSS LTTTMTNLSS SSGGRLKRIL 360
  361 TPTSLGKIHS LVDKGKDKNK NSKYHAFKID NLLIIENEDG DVIKRYKINP HKSDDDKSKN 420
  421 RPRNDSVVSR ALTAVGLKSK ANSGVPPPVD EEKAIEGPSR KGPGMLKKRT LTPAPPRGVQ 480
  481 DSLDLEDEPS SEEDLGDSYN MDDSEDYDDN AYESETEFER QRRLNALGEM TAPADQDDEE 540
  541 LPPLPVEAQT GNDGPGTAEG KKKQKSAAVK SALSKTLGLN K

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [485-658]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTQMTLSGD EGEAEEGGGR KGLAGGEDEE GLNNDQIGSV ATSGIPARPA GGMPRRRKLS  60
   61 RKEKRLNRRQ KLRNKGREIF SSRSKNEMYD DDELNDLGRE RLQKEKEARA ATFALSTAVN 120
  121 TQRNEEIGMG GDEEEDEYTP EKEYSDNYNN TPSFESSERS SSLRGRTYVP RNRY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [659-985]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGEETESEIE SEDEMENESE RSMASSEERR IRKMKEEEMK PGTAYLDGNR MIIENKQGEI  60
   61 LNQVDIEDRN EARDDEVSVD STAHSSLTTT MTNLSSSSGG RLKRILTPTS LGKIHSLVDK 120
  121 GKDKNKNSKY HAFKIDNLLI IENEDGDVIK RYKINPHKSD DDKSKNRPRN DSVVSRALTA 180
  181 VGLKSKANSG VPPPVDEEKA IEGPSRKGPG MLKKRTLTPA PPRGVQDSLD LEDEPSSEED 240
  241 LGDSYNMDDS EDYDDNAYES ETEFERQRRL NALGEMTAPA DQDDEELPPL PVEAQTGNDG 300
  301 PGTAEGKKKQ KSAAVKSALS KTLGLNK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.30103
Match: 2i1jA
Description: No description for 2i1jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle