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View Structure Prediction Details

Protein: SRN2
Organism: Saccharomyces cerevisiae
Length: 213 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRN2.

Description E-value Query
Range
Subject
Range
SRN2 - Component of the ESCRT-I complex, which is involved in ubiquitin-dependent sorting of proteins into ...
SRN2_YEAST - Protein SRN2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRN2 PE=1 SV=1
0.0 [1..213] [1..213]

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Predicted Domain #1
Region A:
Residues: [1-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVKATKLRI KQRRKNKGLN ISRLDIIRAE MDVVPSPGLP EKVNEKSKNI PLPEGINLLS  60
   61 SKEIIDLIQT HRHQLELYVT KFNPLTDFAG KIHAFRDQFK QLEENFEDLH EQKDKVQALL 120
  121 ENCRILESKY VASWQDYHSE FSKKYGDIAL KKKLEQNTKK LDEESSQLET TTRSIDSADD 180
  181 LDQFIKNYLD IRTQYHLRRE KLATWDKQGN LKY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle