| Protein: | SEN2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 377 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEN2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..377] | [1..377] |
|
|
0.0 | [7..377] | [4..380] |
|
|
1.0E-61 | [96..350] | [73..308] |
|
|
3.0E-55 | [155..377] | [8..231] |
|
|
9.0E-49 | [96..350] | [41..314] |
|
Region A: Residues: [1-155] |
1 11 21 31 41 51
| | | | | |
1 MSKGRVNQKR YKYPLPIHPV DDLPELILHN PLSWLYWAYR YYKSTNALND KVHVDFIGDT 60
61 TLHITVQDDK QMLYLWNNGF FGTGQFSRSE PTWKARTEAR LGLNDTPLHN RGGTKSNTET 120
121 EMTLEKVTQQ RRLQRLEFKK ERAKLERELL ELRKK
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.260 | 0.729 | mitochondrion | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.260 | 0.599 | tRNA-intron endonuclease activity | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.259 | 0.117 | tRNA-intron endonuclease activity | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.253 | 0.114 | mitochondrion | a.7.4 | Smac/diablo |
| View | Download | 0.259 | 0.042 | DNA binding | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.375 | 0.016 | tRNA-intron endonuclease activity | d.110.2 | GAF domain-like |
| View | Download | 0.375 | 0.012 | DNA binding | d.110.2 | GAF domain-like |
| View | Download | 0.246 | 0.008 | tRNA-intron endonuclease activity | a.24.11 | Bacterial GAP domain |
| View | Download | 0.253 | 0.005 | tRNA-intron endonuclease activity | a.7.4 | Smac/diablo |
| View | Download | 0.246 | 0.000 | mitochondrion | a.24.11 | Bacterial GAP domain |
| View | Download | 0.245 | N/A | N/A | d.58.39 | Glutamyl tRNA-reductase catalytic, N-terminal domain |
| View | Download | 0.224 | N/A | N/A | d.58.39 | Glutamyl tRNA-reductase catalytic, N-terminal domain |
|
Region A: Residues: [156-260] |
1 11 21 31 41 51
| | | | | |
1 GGHIDEENIL LEKQRESLRK FKLKQTEDVG IVAQQQDISE SNLRDEDNNL LDENGDLLPL 60
61 ESLELMPVEA MFLTFALPVL DISPACLAGK LFQFDAKYKD IHSFV
|
| Detection Method: | |
| Confidence: | 67.529817 |
| Match: | 1a79A_ |
| Description: | tRNA splicing endonuclease, C-terminal domain; tRNA splicing endonuclease EdnA, N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.47870548102815 | bayes_pls_golite062009 |
| protein binding | 0.382621269105676 | bayes_pls_golite062009 |
|
Region A: Residues: [261-377] |
1 11 21 31 41 51
| | | | | |
1 RSYVIYHHYR SHGWCVRSGI KFGCDYLLYK RGPPFQHAEF CVMGLDHDVS KDYTWYSSIA 60
61 RVVGGAKKTF VLCYVERLIS EQEAIALWKS NNFTKLFNSF QVGEVLYKRW VPGRNRD
|
| Detection Method: | |
| Confidence: | 67.529817 |
| Match: | 1a79A_ |
| Description: | tRNA splicing endonuclease, C-terminal domain; tRNA splicing endonuclease EdnA, N-terminal domain |
| Matching Structure (courtesy of the PDB): |
|
