YRC Public Data Repository - Protein Structure Prediction

Protein:	ARP6
Organism:	Saccharomyces cerevisiae
Length:	438 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARP6.

Description	E-value	Query Range	Subject Range
gi\|157763022 - gi\|157763022\|ref\|XP_001673853.1\| Hypothetical protein CBG23091 [Caenorhabditis briggsae AF16] CRE18004 - RP38795 WBGene00085263 locus:Cre-act-2 status:Confirmed act-2 - actin status:Confirmed UniProt:P10984 protein_id:CAB04675.1 gi\|187021297, gi... - gi\|39591934\|emb\|CAE75154.1\| Hypothetical protein CBG23091 [Caenorhabditis briggsae], gi\|187021297\|em...	0.0	[2..432]	[5..376]
ACT5_XENLA - Actin, cytoplasmic type 5 OS=Xenopus laevis PE=3 SV=1	0.0	[2..432]	[5..376]
gi\|447739 - gi\|447739\|prf\|\|1915304A nylB upstream ORF	0.0	[2..432]	[3..374]
gi\|3860544 - gi\|3860544\|emb\|CAA10111.1\| actin [Plectus acuminatus]	0.0	[2..432]	[5..376]
ACT1_ACACA - Actin-1 OS=Acanthamoeba castellanii PE=1 SV=1	0.0	[2..432]	[4..375]
ACT2_ONCVO - Actin-2 OS=Onchocerca volvulus GN=act-2b PE=3 SV=1 gi\|158594157, gi... - gi\|170587336\|ref\|XP_001898433.1\| actin 2 [Brugia malayi], gi\|158594157\|gb\|EDP32745.1\| actin 2, putat...	0.0	[2..432]	[5..376]
ACT_PLAMG - Actin, adductor muscle OS=Placopecten magellanicus PE=2 SV=1	0.0	[2..432]	[5..376]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METPPIVIDN GSYEIKFGPS TNKKPFRALN ALAKDKFGTS YLSNHIKNIK DISSITFRRP  60
   61 HELGQLTLWE LESCIWDYCL FNPSEFDGFD LKEGKGHHLV ASESCMTLPE LSKHADQVIF 120
  121 EEYEFDSLFK SPV

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [396-438]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GWEVMSQFAK TDSYRKARVT REEYYEHGPD WCTKHRFGYQ NWI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	372.9794
Match:	1yagA_
Description:	Actin
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [134-395]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVFVPFTKSY KGEMRTISGK DEDIDIVRGN SDSTNSTSSE SKNAQDSGSD YHDFQLVIDS  60
   61 GFNCTWIIPV LKGIPYYKAV KKLDIGGRFL TGLLKETLSF RHYNMMDETI LVNNIKEQCL 120
  121 FVSPVSYFDS FKTKDKHALE YVLPDFQTSF LGYVRNPRKE NVPLPEDAQI ITLTDELFTI 180
  181 PETFFHPEIS QITKPGIVEA ILESLSMLPE IVRPLMVGNI VCTGGNFNLP NFAQRLAAEL 240
  241 QRQLPTDWTC HVSVPEGDCA LF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	372.9794
Match:	1yagA_
Description:	Actin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits