| Protein: | FRE8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 686 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FRE8.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..686] | [1..686] |
|
|
0.0 | [28..526] | [331..925] |
|
|
0.0 | [28..526] | [254..830] |
|
|
0.0 | [28..526] | [282..868] |
|
|
0.0 | [28..526] | [301..901] |
|
|
0.0 | [28..526] | [320..907] |
|
Region A: Residues: [1-142] |
1 11 21 31 41 51
| | | | | |
1 MNLKSIVSWF KEHLPSFDVD VDKHFRTLRV RKYSQICLLI SFIIICVIIP LMNYLLLTDK 60
61 FFKICHHLKH HVFNRRSWVH KTHMYHKQSL QLCLICFVFT SFFVIQGANG DLLEITKRMG 120
121 RISVALMPPL LFLTLRPSPL PH
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [143-264] |
1 11 21 31 41 51
| | | | | |
1 TLYLALLPLH KWISRIVVLE SILHTWFYLY YMYINDTLYV KMRKLPNIYG VIALGLFLLI 60
61 AITSVRYARR WSYRVFYYVH YVSTWLILVF LHYHARPGIS YYTTLNVLIL TGQIVYRLHI 120
121 TN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| cation transmembrane transporter activity | 3.03953772177035 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 2.97347219787596 | bayes_pls_golite062009 |
| inorganic cation transmembrane transporter activity | 2.75731726445742 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 2.59951851289794 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.29266587906929 | bayes_pls_golite062009 |
| binding | 0.979727257352345 | bayes_pls_golite062009 |
| protein binding | 0.291685656235254 | bayes_pls_golite062009 |
|
Region A: Residues: [265-393] |
1 11 21 31 41 51
| | | | | |
1 VTRVTIVPIS SSLSLLEFPL TDLPKKPILP GGHLRINIYH RNFLRRFFSH LIPFQHPFTI 60
61 ASIPSDNLVR LIIRNGHFPL RTNEKYYITG AFEPELSFIS KPTVPFNITT KSSKNPFRNN 120
121 SSALINSPL
|
| Detection Method: | |
| Confidence: | 40.69897 |
| Match: | 1ib0A_ |
| Description: | cytochrome b5 reductase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.923528499740225 | bayes_pls_golite062009 |
| protein binding | 0.144900113694048 | bayes_pls_golite062009 |
|
Region A: Residues: [394-571] |
1 11 21 31 41 51
| | | | | |
1 NFLIKAQRVF MCVGGSGISF GLPLLRILNF NGVNVRLLWV SRDYKDLEVL NHFKNNFEGM 60
61 EIYISGTEGN EQDIEIDYID YHDCAADIND EVRSISSSGR VSELGDNSML SDGNPQPTEP 120
121 NENTALLSKK STLRNHHPPK TSDIPDINAD DEIDFTYAFS RSKSRKNTAQ GTLTTHSS
|
| Detection Method: | |
| Confidence: | 40.69897 |
| Match: | 1ib0A_ |
| Description: | cytochrome b5 reductase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [572-686] |
1 11 21 31 41 51
| | | | | |
1 FNGSSVFRQP KIIEPPAQDP CLEAAPKKIR IPAGVKVFFG RPTLGDKDYE WCLQTECDAE 60
61 TDSIQCCRWA NQGRDHAEYL SQVWVLAAGP RGLIESTKRW ATDGGLHFHG ESFAL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
