| Protein: | PML1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 204 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PML1.
| Description | E-value | Query Range |
Subject Range |
|
|
6.0E-62 | [1..204] | [1..204] |
|
|
5.0E-35 | [28..203] | [159..311] |
|
|
7.0E-30 | [28..202] | [222..372] |
|
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5.0E-29 | [28..189] | [129..268] |
|
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6.0E-21 | [40..193] | [13..135] |
|
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1.0E-20 | [68..194] | [61..162] |
|
Region A: Residues: [1-72] |
1 11 21 31 41 51
| | | | | |
1 MFHRRKRPYN TRNYGHDDKK FKSQYIDIMP DFSPSGLLEL ESNNKEGIAL KHVEPQDAIS 60
61 PDNYMDMLGL EA
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.715 | 0.027 | cytoplasm | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.783 | 0.027 | cytoplasm | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.802 | 0.027 | cytoplasm | d.58.17 | Metal-binding domain |
| View | Download | 0.651 | 0.027 | cytoplasm | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.665 | 0.027 | cytoplasm | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.635 | 0.027 | cytoplasm | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.618 | 0.027 | cytoplasm | d.58.12 | eEF-1beta-like |
| View | Download | 0.618 | 0.027 | cytoplasm | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.614 | 0.027 | cytoplasm | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.589 | 0.027 | cytoplasm | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.561 | 0.027 | cytoplasm | d.74.5 | Hypothetical protein Yml108w |
| View | Download | 0.553 | 0.027 | cytoplasm | d.58.12 | eEF-1beta-like |
| View | Download | 0.532 | 0.027 | cytoplasm | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.528 | 0.027 | cytoplasm | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.513 | 0.027 | cytoplasm | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.508 | 0.027 | cytoplasm | d.58.17 | Metal-binding domain |
| View | Download | 0.503 | 0.027 | cytoplasm | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.503 | 0.027 | cytoplasm | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.499 | 0.027 | cytoplasm | d.58.17 | Metal-binding domain |
| View | Download | 0.497 | 0.027 | cytoplasm | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.491 | 0.027 | cytoplasm | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.483 | 0.027 | cytoplasm | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.481 | 0.027 | cytoplasm | d.58.17 | Metal-binding domain |
| View | Download | 0.474 | 0.027 | cytoplasm | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.472 | 0.027 | cytoplasm | d.58.5 | GlnB-like |
| View | Download | 0.466 | 0.027 | cytoplasm | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.451 | 0.027 | cytoplasm | d.58.17 | Metal-binding domain |
| View | Download | 0.449 | 0.027 | cytoplasm | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.449 | 0.027 | cytoplasm | d.74.5 | Hypothetical protein Yml108w |
| View | Download | 0.444 | 0.027 | cytoplasm | d.58.10 | Acylphosphatase-like |
| View | Download | 0.440 | 0.027 | cytoplasm | d.12.1 | Ribosomal proteins L23 and L15e |
| View | Download | 0.434 | 0.027 | cytoplasm | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.433 | 0.027 | cytoplasm | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.431 | 0.027 | cytoplasm | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.430 | 0.027 | cytoplasm | d.58.17 | Metal-binding domain |
| View | Download | 0.416 | 0.027 | cytoplasm | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.415 | 0.027 | cytoplasm | d.58.17 | Metal-binding domain |
| View | Download | 0.414 | 0.027 | cytoplasm | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.400 | 0.027 | cytoplasm | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.398 | 0.027 | cytoplasm | d.74.3 | RBP11-like subunits of RNA polymerase |
| View | Download | 0.393 | 0.027 | cytoplasm | d.58.10 | Acylphosphatase-like |
| View | Download | 0.390 | 0.027 | cytoplasm | d.58.17 | Metal-binding domain |
| View | Download | 0.390 | 0.027 | cytoplasm | d.58.12 | eEF-1beta-like |
| View | Download | 0.387 | 0.027 | cytoplasm | b.49.1 | N-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.379 | 0.027 | cytoplasm | d.52.4 | YhbC-like, N-terminal domain |
| View | Download | 0.377 | 0.027 | cytoplasm | d.74.5 | Hypothetical protein Yml108w |
| View | Download | 0.376 | 0.027 | cytoplasm | d.58.17 | Metal-binding domain |
| View | Download | 0.373 | 0.027 | cytoplasm | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.369 | 0.027 | cytoplasm | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.368 | 0.027 | cytoplasm | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.356 | 0.027 | cytoplasm | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.354 | 0.027 | cytoplasm | d.206.1 | YggU-like |
| View | Download | 0.353 | 0.027 | cytoplasm | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.350 | 0.027 | cytoplasm | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.346 | 0.027 | cytoplasm | g.3.11 | EGF/Laminin |
| View | Download | 0.346 | 0.027 | cytoplasm | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.344 | 0.027 | cytoplasm | d.206.1 | YggU-like |
| View | Download | 0.344 | 0.027 | cytoplasm | d.58.10 | Acylphosphatase-like |
| View | Download | 0.338 | 0.027 | cytoplasm | d.58.17 | Metal-binding domain |
| View | Download | 0.338 | 0.027 | cytoplasm | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.337 | 0.027 | cytoplasm | d.58.17 | Metal-binding domain |
| View | Download | 0.336 | 0.027 | cytoplasm | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.335 | 0.027 | cytoplasm | d.58.5 | GlnB-like |
| View | Download | 0.334 | 0.027 | cytoplasm | d.58.35 | Pseudouridine synthase |
| View | Download | 0.333 | 0.027 | cytoplasm | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.329 | 0.027 | cytoplasm | d.58.26 | GHMP Kinase, C-terminal domain |
| View | Download | 0.328 | 0.027 | cytoplasm | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.328 | 0.027 | cytoplasm | d.58.36 | Sulfite reductase, domains 1 and 3 |
| View | Download | 0.325 | 0.027 | cytoplasm | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.324 | 0.027 | cytoplasm | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.319 | 0.027 | cytoplasm | d.58.40 | D-ribose-5-phosphate isomerase (RpiA), lid domain |
| View | Download | 0.318 | 0.027 | cytoplasm | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.316 | 0.027 | cytoplasm | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.316 | 0.027 | cytoplasm | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.312 | 0.027 | cytoplasm | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.312 | 0.027 | cytoplasm | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.311 | 0.027 | cytoplasm | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.310 | 0.027 | cytoplasm | d.58.8 | Viral DNA-binding domain |
| View | Download | 0.309 | 0.027 | cytoplasm | d.74.3 | RBP11-like subunits of RNA polymerase |
| View | Download | 0.306 | 0.027 | cytoplasm | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.305 | 0.027 | cytoplasm | d.58.40 | D-ribose-5-phosphate isomerase (RpiA), lid domain |
| View | Download | 0.303 | 0.027 | cytoplasm | d.58.12 | eEF-1beta-like |
| View | Download | 0.302 | 0.027 | cytoplasm | d.74.5 | Hypothetical protein Yml108w |
| View | Download | 0.298 | 0.027 | cytoplasm | d.58.42 | N-utilization substance G protein NusG, N-terminal domain |
| View | Download | 0.297 | 0.027 | cytoplasm | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.296 | 0.027 | cytoplasm | d.58.24 | CheY-binding domain of CheA |
| View | Download | 0.294 | 0.027 | cytoplasm | d.58.10 | Acylphosphatase-like |
| View | Download | 0.291 | 0.027 | cytoplasm | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.288 | 0.027 | cytoplasm | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.287 | 0.027 | cytoplasm | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.285 | 0.027 | cytoplasm | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.281 | 0.027 | cytoplasm | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.279 | 0.027 | cytoplasm | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.278 | 0.027 | cytoplasm | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.276 | 0.027 | cytoplasm | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.274 | 0.027 | cytoplasm | b.34.5 | Translation proteins SH3-like domain |
| View | Download | 0.269 | 0.027 | cytoplasm | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.269 | 0.027 | cytoplasm | d.58.40 | D-ribose-5-phosphate isomerase (RpiA), lid domain |
| View | Download | 0.269 | 0.027 | cytoplasm | d.58.40 | D-ribose-5-phosphate isomerase (RpiA), lid domain |
| View | Download | 0.268 | 0.027 | cytoplasm | d.214.1 | Hypothetical protein MTH1880 |
| View | Download | 0.268 | 0.027 | cytoplasm | d.58.5 | GlnB-like |
| View | Download | 0.268 | 0.027 | cytoplasm | d.129.2 | Phosphoglucomutase, C-terminal domain |
| View | Download | 0.267 | 0.027 | cytoplasm | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.267 | 0.027 | cytoplasm | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.266 | 0.027 | cytoplasm | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.265 | 0.027 | cytoplasm | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.262 | 0.027 | cytoplasm | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.261 | 0.027 | cytoplasm | d.58.17 | Metal-binding domain |
| View | Download | 0.260 | 0.027 | cytoplasm | d.58.14 | Ribosomal protein S6 |
| View | Download | 0.259 | 0.027 | cytoplasm | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.258 | 0.027 | cytoplasm | d.201.1 | SRP19 |
| View | Download | 0.257 | 0.027 | cytoplasm | d.58.17 | Metal-binding domain |
| View | Download | 0.256 | 0.027 | cytoplasm | d.201.1 | SRP19 |
| View | Download | 0.254 | 0.027 | cytoplasm | d.52.2 | GMP synthetase C-terminal dimerisation domain |
| View | Download | 0.252 | 0.027 | cytoplasm | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.251 | 0.027 | cytoplasm | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.251 | 0.027 | cytoplasm | a.77.1 | DEATH domain |
| View | Download | 0.251 | 0.027 | cytoplasm | g.3.7 | Scorpion toxin-like |
| View | Download | 0.248 | 0.027 | cytoplasm | d.58.3 | Protease propeptides/inhibitors |
| View | Download | 0.248 | 0.027 | cytoplasm | d.58.42 | N-utilization substance G protein NusG, N-terminal domain |
| View | Download | 0.247 | 0.027 | cytoplasm | d.9.2 | Description not found. |
| View | Download | 0.246 | 0.027 | cytoplasm | d.206.1 | YggU-like |
| View | Download | 0.246 | 0.027 | cytoplasm | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.243 | 0.027 | cytoplasm | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.243 | 0.027 | cytoplasm | d.212.1 | TolA/TonB C-terminal domain |
| View | Download | 0.243 | 0.027 | cytoplasm | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.241 | 0.027 | cytoplasm | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.237 | 0.027 | cytoplasm | d.52.6 | BolA-like |
| View | Download | 0.236 | 0.027 | cytoplasm | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.236 | 0.027 | cytoplasm | d.74.2 | C-terminal domain of arginine repressor |
| View | Download | 0.235 | 0.027 | cytoplasm | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.232 | 0.027 | cytoplasm | d.58.12 | eEF-1beta-like |
| View | Download | 0.231 | 0.027 | cytoplasm | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.228 | 0.027 | cytoplasm | d.58.10 | Acylphosphatase-like |
| View | Download | 0.227 | 0.027 | cytoplasm | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.223 | 0.027 | cytoplasm | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.223 | 0.027 | cytoplasm | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.222 | 0.027 | cytoplasm | d.201.1 | SRP19 |
| View | Download | 0.219 | 0.027 | cytoplasm | d.58.17 | Metal-binding domain |
| View | Download | 0.217 | 0.027 | cytoplasm | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.216 | 0.027 | cytoplasm | d.58.12 | eEF-1beta-like |
| View | Download | 0.215 | 0.027 | cytoplasm | b.1.2 | Fibronectin type III |
| View | Download | 0.214 | 0.027 | cytoplasm | d.15.7 | Immunoglobulin-binding domains |
| View | Download | 0.214 | 0.027 | cytoplasm | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
| View | Download | 0.214 | 0.027 | cytoplasm | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.213 | 0.027 | cytoplasm | d.12.1 | Ribosomal proteins L23 and L15e |
| View | Download | 0.213 | 0.027 | cytoplasm | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.212 | 0.027 | cytoplasm | d.58.36 | Sulfite reductase, domains 1 and 3 |
| View | Download | 0.211 | 0.027 | cytoplasm | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.210 | 0.027 | cytoplasm | d.58.36 | Sulfite reductase, domains 1 and 3 |
| View | Download | 0.209 | 0.027 | cytoplasm | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.209 | 0.027 | cytoplasm | b.1.1 | Immunoglobulin |
| View | Download | 0.209 | 0.027 | cytoplasm | d.58.36 | Sulfite reductase, domains 1 and 3 |
| View | Download | 0.208 | 0.027 | cytoplasm | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.208 | 0.027 | cytoplasm | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.208 | 0.027 | cytoplasm | a.64.1 | Saposin |
| View | Download | 0.207 | 0.027 | cytoplasm | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.207 | 0.027 | cytoplasm | d.74.5 | Hypothetical protein Yml108w |
| View | Download | 0.205 | 0.027 | cytoplasm | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.203 | 0.027 | cytoplasm | g.3.7 | Scorpion toxin-like |
| View | Download | 0.202 | 0.027 | cytoplasm | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.202 | 0.027 | cytoplasm | g.3.7 | Scorpion toxin-like |
| View | Download | 0.201 | 0.027 | cytoplasm | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.201 | 0.027 | cytoplasm | d.52.6 | BolA-like |
| View | Download | 0.201 | 0.027 | cytoplasm | d.74.3 | RBP11-like subunits of RNA polymerase |
| View | Download | 0.200 | 0.027 | cytoplasm | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
|
Region A: Residues: [73-204] |
1 11 21 31 41 51
| | | | | |
1 RDRTMYELVI YRKNDKDKGP WKRYDLNGRS CYLVGRELGH SLDTDLDDRT EIVVADIGIP 60
61 EETSSKQHCV IQFRNVRGIL KCYVMDLDSS NGTCLNNVVI PGARYIELRS GDVLTLSEFE 120
121 EDNDYELIFM NV
|
| Detection Method: | |
| Confidence: | 8.221849 |
| Match: | 1lgqA_ |
| Description: | Cell cycle checkpoint protein Chfr |
Matching Structure (courtesy of the PDB): |
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