YRC Public Data Repository - Protein Structure Prediction

Protein:	RLP24
Organism:	Saccharomyces cerevisiae
Length:	199 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLP24.

Description	E-value	Query Range	Subject Range
gi\|15779001 - gi\|15779001\|gb\|AAH14576.1\| Ribosomal L24 domain containing 1 [Homo sapiens]	2.0E-54	[1..163]	[1..161]
RLP24_MOUSE - Probable ribosome biogenesis protein RLP24 OS=Mus musculus GN=Rsl24d1 PE=2 SV=1	2.0E-53	[1..163]	[1..161]
RLP24_YEAST - Ribosome biogenesis protein RLP24 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RLP24 ... gi\|190406050 - gi\|190406050\|gb\|EDV09317.1\| Ribosome biogenesis protein RLP24 [Saccharomyces cerevisiae RM11-1a] RLP24 - Essential protein with similarity to Rpl24Ap and Rpl24Bp, associated with pre-60S ribosomal subunits... gi\|207343211 - gi\|207343211\|gb\|EDZ70743.1\| YLR009Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|151941177 - gi\|151941177\|gb\|EDN59555.1\| part of a pre-60S complex [Saccharomyces cerevisiae YJM789]	2.0E-46	[1..199]	[1..199]
rpl2403 - 60S ribosomal protein L24-3 (L30) RLP24_SCHPO - Ribosome biogenesis protein rlp24 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rlp24 PE...	4.0E-45	[1..165]	[1..163]
RLP24_ARATH - Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana GN=At2g44860 PE=1 SV=1	2.0E-43	[1..159]	[1..159]
rpl-24.2 - ribosomal protein status:Confirmed UniProt:Q17606 protein_id:CAA99764.1	6.0E-37	[1..155]	[1..159]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIYQCHFCS SPCYPGHGIM FVRNDAKEFR FCRSKCHKAF KQRRNPRKLK WTKAFRKAAG  60
   61 K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	95.154902
Match:	1k5yS_
Description:	No description for 1k5yS_ was found.

Predicted Domain #2

Region A:
Residues: [62-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELAVDSTLTF AQRRNVPVRY NRELVATTLK AMARIEEIRQ KRERAFYKNR MRGNKEKDFL  60
   61 RDKKLVESNP ELLRIREVEI ARKLAKEQER AESVSEQEES EEEEEDMEID SDEEEEEQLE 120
  121 KQKILLKNRR RNTKKIAF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits