| Protein: | SSK1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 712 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSK1.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..712] | [1..712] |
|
|
0.0 | [225..655] | [318..738] |
|
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0.0 | [234..652] | [333..737] |
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0.0 | [225..652] | [320..734] |
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0.0 | [225..655] | [334..754] |
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0.0 | [225..655] | [334..754] |
|
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0.0 | [225..652] | [320..737] |
|
Region A: Residues: [1-183] |
1 11 21 31 41 51
| | | | | |
1 MLNSALLWKV WLRIDNSTDE VNQPIAVQFD EIDTVDDLKS RFFQKLSSTR WREINDNASI 60
61 AIGLYAPKFD NQADNTSSNN TNDNSCRSKS NGAGSGANLS VNSNTKSSVS PTAGSFGLSK 120
121 DLAKDRNVLQ HPKPTQKRGA LYDAFAAVPT VAATTNVDFP PNEAPMLSPQ RPYSTSPKQF 180
181 PAT
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [184-314] |
1 11 21 31 41 51
| | | | | |
1 TKSPLLRFAS VSPYPKFHSD NQIMASAGLT YVSPHNKNKY TRPLIRKGLN FTTESVNDCT 60
61 YKIIFEPDEL AINIYKELFG TMGSQPASQP LLIFSNVNLR QDVPPLDILN VVDYVPTNEE 120
121 ISQQKTQPTD H
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.428 | 0.081 | osmosensory signaling pathway via two-component system | d.95.2 | Homing endonucleases |
| View | Download | 0.416 | 0.039 | osmosensory signaling pathway via two-component system | a.158.1 | F-box domain |
| View | Download | 0.381 | 0.027 | osmosensory signaling pathway via two-component system | d.77.1 | Ribosomal protein L5 |
| View | Download | 0.357 | 0.008 | osmosensory signaling pathway via two-component system | d.228.1 | Replication modulator SeqA, C-terminal DNA-binding domain |
| View | Download | 0.397 | N/A | N/A | d.224.1 | SufE-like |
| View | Download | 0.341 | N/A | N/A | a.25.2 | Thermoplasma ferritin-like 4-helical bundle |
| View | Download | 0.318 | N/A | N/A | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.312 | N/A | N/A | c.23.6 | Cobalamin (vitamin B12)-binding domain |
| View | Download | 0.284 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.269 | N/A | N/A | d.95.2 | Homing endonucleases |
| View | Download | 0.266 | N/A | N/A | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.264 | N/A | N/A | a.60.1 | SAM/Pointed domain |
| View | Download | 0.255 | N/A | N/A | a.40.2 | X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain |
| View | Download | 0.241 | N/A | N/A | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.217 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.211 | N/A | N/A | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.203 | N/A | N/A | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.201 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
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Region A: Residues: [315-497] |
1 11 21 31 41 51
| | | | | |
1 GAVGVFHLDD HISPGEQGLK QTIGDKADLK GKDGNSSPQE FKLITDEEQL RRASQELKDE 60
61 EKDAESPWQA ILLLPKGYKG GVDFRNKPVA HTDSSFNNED TITHSELEVN TGSPSQESGS 120
121 LNEAGIGITQ PMSEVQRRKE DVTPASPILT SSQTPHYSNS LYNAPFAVSS PPDPLPNLFT 180
181 TTS
|
| Detection Method: | |
| Confidence: | 13.69897 |
| Match: | 1bxdA_ |
| Description: | Histidine kinase domain of the osmosensor EnvZ |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [498-712] |
1 11 21 31 41 51
| | | | | |
1 EKVFPKINVL IVEDNVINQA ILGSFLRKHK ISYKLAKNGQ EAVNIWKEGG LHLIFMDLQL 60
61 PVLSGIEAAK QIRDFEKQNG IGIQKSLNNS HSNLEKGTSK RFSQAPVIIV ALTASNSQMD 120
121 KRKALLSGCN DYLTKPVNLH WLSKKITEWG CMQALIDFDS WKQGESRMTD SVLVKSPQKP 180
181 IAPSNPHSFK QATSMTPTHS PVRKNSNLSP TQIEL
|
| Detection Method: | |
| Confidence: | 41.522879 |
| Match: | 1kgsA_ |
| Description: | PhoB; PhoB receiver domain |
Matching Structure (courtesy of the PDB): |
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