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View Structure Prediction Details

Protein: YCT1
Organism: Saccharomyces cerevisiae
Length: 531 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCT1.

Description E-value Query
Range
Subject
Range
gi|9719374 - gi|9719374|gb|AAF97769.1| membrane glycoprotein HP59 [Homo sapiens]
2.0E-77 [23..480] [47..530]
VGLU2_RAT - Vesicular glutamate transporter 2 OS=Rattus norvegicus GN=Slc17a6 PE=1 SV=1
2.0E-76 [18..486] [32..515]
S17A5_SHEEP - Sialin OS=Ovis aries GN=SLC17A5 PE=2 SV=1
2.0E-75 [23..477] [6..486]
FBpp0309074, FBp... - The gene Picot is referred to in FlyBase by the symbol Dmel\Picot (CG8098, FBgn0024315). It is a pro...
gi|220956502, gi... - gi|220956502|gb|ACL90794.1| Picot-PA [synthetic construct], gi|220946938|gb|ACL86012.1| Picot-PA [sy...
4.0E-75 [46..500] [17..504]
gi|9657525, gi|1... - gi|9657525|gb|AAF96050.1| glycerol-3-phosphate transporter [Vibrio cholerae O1 biovar eltor str. N16...
gi|11277446 - pir||C82495 glycerol-3-phosphate transporter VCA0137 [imported] - Vibrio cholerae (strain N16961 ser...
3.0E-74 [13..478] [1..465]

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Predicted Domain #1
Region A:
Residues: [1-531]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVDVKIGA DSISSSDEIL VPSRLADVTL AFMEENDAAV PEITPEQEKK LKRKLFLTIF  60
   61 TFVSAINLLL YMDKATLSYD SILGFFEDTG LTQNTYNTVN TLFYVGFAIG QFPGQYLAQK 120
  121 LPLGKFLGGL LATWTILIFL SCTAYNFSGV VALRFFLGLT ESVVIPILIT TMGMFFDASE 180
  181 RAAAQPFFFA ACMGSPIPTG FIAYGVLHIT NPSISLWKIF TIIIGGLTFI MTVVVILWFP 240
  241 NNPADVKFFS IQERVWIIRR VQASTGSSIE QKVFKKSQFR EAMKDYITWL FGLFFLLQQL 300
  301 ANNLPYQQNL LFEGMGGVDA LGSTLVSVAG AGFAVVCAFI ATLMLAKWKN ISALTAIFWT 360
  361 LPALVGSIAA AALPWDNKIG ILANICMAGQ IFGIPFIIAL SWASSSASGY TKKLTRSSVS 420
  421 LFAMGIANII SPQIWREKDS PRFLPAWIVQ IVLSFSLAPA ILLLIHFILK RRNNQRLKNY 480
  481 DENLQNYLDR IQLIESENPS SIEEGKVVTH ENNLAVFDLT DLENETFIYP L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.30103
Match: 1ja5A_
Description: No description for 1ja5A_ was found.

Predicted functions:

Term Confidence Notes
substrate-specific transmembrane transporter activity 5.46247398538901 bayes_pls_golite062009
ion transmembrane transporter activity 4.58978526526921 bayes_pls_golite062009
transporter activity 4.09176719149278 bayes_pls_golite062009
anion transmembrane transporter activity 3.94605227012838 bayes_pls_golite062009
cation transmembrane transporter activity 3.88180006470231 bayes_pls_golite062009
substrate-specific transporter activity 3.59744164024479 bayes_pls_golite062009
transmembrane transporter activity 3.5865018981083 bayes_pls_golite062009
inorganic anion transmembrane transporter activity 2.52916479889426 bayes_pls_golite062009
organic acid transmembrane transporter activity 2.15783210522667 bayes_pls_golite062009
active transmembrane transporter activity 1.59419818573076 bayes_pls_golite062009
secondary active transmembrane transporter activity 1.22264637452409 bayes_pls_golite062009
polyol transmembrane transporter activity 0.924836669821548 bayes_pls_golite062009
alcohol transmembrane transporter activity 0.924836669821548 bayes_pls_golite062009
binding 0.873217664940684 bayes_pls_golite062009
glycerol transmembrane transporter activity 0.812001619402678 bayes_pls_golite062009
symporter activity 0.74591237387473 bayes_pls_golite062009
solute:cation symporter activity 0.74591237387473 bayes_pls_golite062009
phosphate transmembrane transporter activity 0.312628600969375 bayes_pls_golite062009
cation:sugar symporter activity 0.143419068761182 bayes_pls_golite062009
sugar:hydrogen symporter activity 0.143419068761182 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle