| Protein: | FRE6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 712 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FRE6.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..712] | [1..712] |
|
|
0.0 | [4..712] | [6..706] |
|
|
0.0 | [172..710] | [315..921] |
|
|
0.0 | [172..710] | [315..921] |
|
|
0.0 | [172..710] | [260..867] |
|
|
0.0 | [172..710] | [307..938] |
|
Region A: Residues: [1-272] |
1 11 21 31 41 51
| | | | | |
1 MHRTLLFLTW LISLTKAFNI KLPHTEKKDH LESNAVLACA SYINTLKWSF DSSVVPGFYS 60
61 TICSYSPAFD TWSLCIFNSL TDQIIPMDNT SFEESLGNVR KTCSFVDKKF SNISLEQYYS 120
121 SLNNASSHAL EDYGSIESLS TSIRVDRETR SRWIRAFHAH AYNLDISSVY GAYLTYYFVI 180
181 VGIIAVFFHM SHYNGLNRAL FASRFVNYIR GHFVLPTFLV DKHANHFKFL NVEVFTGLMP 240
241 NSLEAWIIFG YTLANIIFLS ISYIIDPYNL IF
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [273-422] |
1 11 21 31 41 51
| | | | | |
1 NSHLSQFTRL LADRSGILAF TQFPLIIIFT ARNSFLEFLT GVKFNSFISF HKWIGRIMVL 60
61 NATIHSLSYS LFAIINHAFK ISNKQLYWKF GIASITVLCV LLVLSLGIVR KRHYEFFLYT 120
121 HIILALLFFY CCWQHVKIFN GWKEWIVVSL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.923 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.899 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.696 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.680 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.589 | N/A | N/A | a.25.1 | Ferritin-like |
|
Region A: Residues: [423-540] |
1 11 21 31 41 51
| | | | | |
1 LIWGLEKLFR IWNILQFRFP KATLINLNTS NNPHDEMFKV IIPKYNRRWH SKPGQYCFIY 60
61 FLHPLVFWQC HPFTIIDEGE KCVLVIKPKS GLTRFIYNHI LQSLNGKLQL RVAIEGPY
|
| Detection Method: | |
| Confidence: | 52.69897 |
| Match: | 1cnf__ |
| Description: | Nitrate reductase core domain; Nitrate reductase |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.13408475648113 | bayes_pls_golite062009 |
| oxidoreductase activity | 0.58197349520772 | bayes_pls_golite062009 |
| protein binding | 0.144900113694048 | bayes_pls_golite062009 |
| cofactor binding | 0.0731141170494622 | bayes_pls_golite062009 |
|
Region A: Residues: [541-712] |
1 11 21 31 41 51
| | | | | |
1 GPSNLHLDKF DHLLLLSGGT GLPGPLDHAI KLSRNPDKPK SIDLIMAIKN PSFLNGYKSE 60
61 ILELKNSRSH VNVQVYLTQK TAVTKAANAR DQLIHFDDIM TELTSFAHIG NARPNFSNVI 120
121 ENAIKSTPPG DSLAVVCCGP PVLVDDVRNT VSQKLLGYPE RIIEYFEEYQ CW
|
| Detection Method: | |
| Confidence: | 52.69897 |
| Match: | 1cnf__ |
| Description: | Nitrate reductase core domain; Nitrate reductase |
| Matching Structure (courtesy of the PDB): |
|
