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View Structure Prediction Details

Protein: GRC3
Organism: Saccharomyces cerevisiae
Length: 632 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRC3.

Description E-value Query
Range		 Subject
Range
GRC3_YEAST - Polynucleotide 5'-hydroxyl-kinase GRC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=G...
GRC3 - Protein of unknown function, required for cell growth and possibly involved in rRNA processing; mRNA...
 0.0 [1..632] [1..632]
GRC3_SCHPO - Polynucleotide 5'-hydroxyl-kinase grc3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=grc...
SPCC830.03 - AAA family ATPase Grc3
 0.0 [32..583] [118..690]
gi|17944386 - gi|17944386|gb|AAL48084.1| RE71565p [Drosophila melanogaster]
 0.0 [1..564] [377..931]
NOL9_ARATH - Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Arabidopsis thaliana GN=At5g11010 PE=2 SV=1
 2.0E-80 [218..585] [11..348]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 4.0E-79 [218..585] [11..360]
gi|12852502, gi|... - gi|21311971|ref|NP_083003.1| nucleolar protein 9 [Mus musculus], gi|12852502|dbj|BAB29433.1| unnamed...
 9.0E-79 [236..587] [312..667]
CLP1_MACFA - Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Macaca fascicularis GN=CLP1 PE=2 SV=1
gi|109106241 - gi|109106241|ref|XP_001101762.1| PREDICTED: ATP/GTP-binding protein [Macaca mulatta]
CCDS7964.1_1 - null
ENSCJAT00000016978 - null
CLP1 - CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)
 9.0E-70 [224..564] [98..414]

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Predicted Domain #1
Region A:
Residues: [1-196] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIDSKQDLP QYTKDSGSES DSDSSNNFIV ESPSIPSSKS ATVVLNSEEY EDDEGDDLNG  60
   61 LDAELIDNIT YEGDEDETMF VGLKEKQKLH LSGVFRLQVV KGGIVYNNVH YNASREILTF 120
  121 WHPLSQSIPT IDFSHFAGWQ DTFFMPRNNR FKIRDEEFKS FPCVLRVFNS NHTGLLEAGH 180
  181 LYRDVNYLWK PKEPYF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [197-401] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLNERTTYHL LHESDRIQSL SVPGYWSTPL EKLYLSHKNA AYDTRIMVIG GKNSGKSTFL  60
   61 RLLLEKFTQD IRDSTTSQEE LVYLDLDPGQ PEYSLPDSIS LNKILSSPIS LGQHLCQGSN 120
  121 FQTLLQFYAG SSSPQDEPTS YLNCADKLID HLEEQAFFGT SLLNLPGWIK GFGMQILNHI 180
  181 IRKYKPTHLL FLETANSKRH LDELT

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 9.02
Match: 1jsqA
Description: MsbA
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [402-632] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPQSFSTSLR DAYAPEVVRV PAHSLNHTLS SRFHASQLRT FKILALFHKI TQFDYDFAPL  60
   61 LKSAPLQISY GKGKSGIKGI QFPMEFQDLN PQDIKSALEG TVIGIYTYSG EDSLEVKSLN 120
  121 TFPILQSCTS SSKNFITLGL IHSIDTSQQI MNIYVPPCHT QILDKQPEDA QWIIVRNKTE 180
  181 TPFCDFLPSP RTITWDDNIQ IPFATFERRK KLEHVWKVRK NVMRRGQFMK R

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle