YRC Public Data Repository - Protein Structure Prediction

Protein:	RTT109
Organism:	Saccharomyces cerevisiae
Length:	436 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTT109.

Description	E-value	Query Range	Subject Range
rtt109 - RTT109 family histone lysine acetyltransferase RT109_SCHPO - Histone acetyltransferase rtt109 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rtt109 PE...	385.0	[0..189]	[431..114]
gi\|49644797 - gi\|49644797\|emb\|CAG98369.1\| KLLA0F12914p [Kluyveromyces lactis] gi\|50311273, gi\|... - gi\|50311273\|ref\|XP_455661.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644797\|emb\|CAG9836...	365.0	[0..1]	[432..1]
gi\|49524966, gi\|... - gi\|50286465\|ref\|XP_445661.1\| unnamed protein product [Candida glabrata], gi\|49524966\|emb\|CAG58572.1\|... gi\|49524966 - gi\|49524966\|emb\|CAG58572.1\| unnamed protein product [Candida glabrata]	361.0	[0..3]	[429..2]
gi\|44979997 - gi\|44979997\|gb\|AAS50193.1\| AAL173Cp [Ashbya gossypii ATCC 10895] gi\|44979997, gi\|... - gi\|45184651\|ref\|NP_982369.1\| AAL173Cp [Ashbya gossypii ATCC 10895], gi\|44979997\|gb\|AAS50193.1\| AAL17...	288.0	[0..1]	[427..1]
gi\|50419335, gi\|... - gi\|50419335\|ref\|XP_458192.1\| hypothetical protein DEHA0C12859g [Debaryomyces hansenii CBS767], gi\|49...	192.0	[0..2]	[331..14]
orf19.7491 - orf19.7491 CGDID:CAL0005733 Assembly 19, Contig19-2516 (63195, 62116) CDS, reverse complemented, tra... RT109_CANAL - Histone acetyltransferase RTT109 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RTT109 PE=3 ...	177.0	[0..16]	[331..11]
gi\|50556166, gi\|... - gi\|50556166\|ref\|XP_505491.1\| YALI0F16313p [Yarrowia lipolytica], gi\|49651361\|emb\|CAG78300.1\| unnamed... gi\|49651361 - gi\|49651361\|emb\|CAG78300.1\| YALI0F16313p [Yarrowia lipolytica]	160.0	[0..188]	[429..249]
gi\|85090662 - gi\|85090662\|ref\|XP_958524.1\| hypothetical protein NCU09825 [Neurospora crassa OR74A] gi\|28919894, gi\|... - gi\|32420063\|ref\|XP_330475.1\| hypothetical protein [Neurospora crassa], gi\|28919894\|gb\|EAA29288.1\| co...	137.0	[0..7]	[332..45]
gi\|83773616 - gi\|83773616\|dbj\|BAE63743.1\| unnamed protein product [Aspergillus oryzae] gi\|169780824 - gi\|169780824\|ref\|XP_001824876.1\| hypothetical protein [Aspergillus oryzae RIB40]	128.0	[0..1]	[375..27]
gi\|38106550, gi\|... - gi\|39976209\|ref\|XP_369495.1\| hypothetical protein MG05969.4 [Magnaporthe grisea 70-15], gb\|EAA52841....	122.0	[0..7]	[360..26]

Back

Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNDFLSSV LPVSEQFEYL SLQSIPLETH AVVTPNKDDK RVPKSTIKTQ HFFSLFHQGK  60
   61 VFFSLEVYVY VTLWDEADAE RLIFVSKADT NGYCNTRVSV RDITKIILEF ILSIDPNYYL 120
  121 QKVKPAIRSY KKISPELISA ASTPARTLRI LARRLKQSGS TVLKEIES

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.878	c.50.1	Macro domain-like
View	Download	0.699	a.7.4	Smac/diablo
View	Download	0.699	a.7.4	Smac/diablo
View	Download	0.694	f.1.4	Bcl-2 inhibitors of programmed cell death
View	Download	0.686	a.1.1	Globin-like
View	Download	0.661	d.129.9	Description not found.
View	Download	0.642	a.1.1	Globin-like
View	Download	0.642	a.1.1	Globin-like
View	Download	0.599	d.54.1	Enolase N-terminal domain-like
View	Download	0.556	a.25.1	Ferritin-like

Predicted Domain #2

Region A:
Residues: [169-436]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRFQQDLYLS FTCPREILTK ICLFTRPASQ YLFPDSSKNS KKHILNGEEL MKWWGFILDR  60
   61 LLIECFQNDT QAKLRIPGED PARVRSYLRG MKYPLWQVGD IFTSKENSLA VYNIPLFPDD 120
  121 PKARFIHQLA EEDRLLKVSL SSFWIELQER QEFKLSVTSS VMGISGYSLA TPSLFPSSAD 180
  181 VIVPKSRKQF RAIKKYITGE EYDTEEGAIE AFTNIRDFLL LRMATNLQSL TGKREHRERN 240
  241 QPVPASNINT LAITMLKPRK KAKALPKT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits