| Protein: | VBA5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 582 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VBA5.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-88 | [1..582] | [1..582] |
|
|
2.0E-80 | [1..572] | [1..525] |
|
|
7.0E-75 | [3..582] | [2..575] |
|
|
7.0E-74 | [3..566] | [13..530] |
|
|
1.0E-72 | [2..578] | [65..608] |
|
|
1.0E-72 | [2..574] | [25..574] |
|
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2.0E-72 | [34..499] | [4..418] |
|
|
3.0E-71 | [2..572] | [68..594] |
|
Region A: Residues: [1-242] |
1 11 21 31 41 51
| | | | | |
1 MEETKYSSQQ EIEGACGSDA SLNARGSNDS PMGLSLYLCL ASLTLVLFIT ALDILIVGTI 60
61 IDVVAEQFGN YSKTGWLVTG YSLPNAILSL IWGRFASIIG FQHSLILAIL IFEAGSLIAA 120
121 LASSMNMLIF GRVVAGVGGS GLQTLCFVIG CTMVGERSRP LVISILSCAF AVAAIVGPII 180
181 GGAFTTHVTW RWCFYINLPI GGLAIIMFLL TYKAENKGIL QQIKDAIGTI SSFTFSKFRH 240
241 QV
|
| Detection Method: |  |
| Confidence: | 9.154902 |
| Match: | 1lviA_ |
| Description: | No description for 1lviA_ was found. |
| Term | Confidence | Notes |
| transporter activity | 4.09176719149278 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 3.59744164024479 | bayes_pls_golite062009 |
| transmembrane transporter activity | 3.5865018981083 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 3.54194478414824 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 2.21266150105753 | bayes_pls_golite062009 |
| organic acid transmembrane transporter activity | 2.15783210522667 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 1.79369588808394 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 1.59419818573076 | bayes_pls_golite062009 |
| secondary active transmembrane transporter activity | 1.22264637452409 | bayes_pls_golite062009 |
| binding | 1.01584233411372 | bayes_pls_golite062009 |
| polyol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| alcohol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| glycerol transmembrane transporter activity | 0.812001619402678 | bayes_pls_golite062009 |
| symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| solute:cation symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| cation:sugar symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
| sugar:hydrogen symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
|
Region A: Residues: [243-314] |
1 11 21 31 41 51
| | | | | |
1 NFKRLMNGII FKFDFFGFAL CSAGLVLFLL GLTFGGNKYS WNSGQVITYL VLGVLLFIFS 60
61 LVYDFFLFDK FN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.790 | a.2.1 | GreA transcript cleavage protein, N-terminal domain |
| View | Download | 0.601 | a.2.7 | tRNA-binding arm |
| View | Download | 0.585 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.561 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.538 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.536 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.519 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.511 | a.2.7 | tRNA-binding arm |
| View | Download | 0.498 | a.77.1 | DEATH domain |
| View | Download | 0.482 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.474 | a.30.2 | Homodimeric domain of signal transducing histidine kinase |
| View | Download | 0.461 | d.58.17 | Metal-binding domain |
| View | Download | 0.447 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.444 | f.28.1 | Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.432 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.431 | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.430 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.427 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.422 | a.59.1 | PAH2 domain |
| View | Download | 0.402 | d.58.17 | Metal-binding domain |
| View | Download | 0.401 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.393 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.392 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.389 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
| View | Download | 0.388 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.388 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.380 | a.4.8 | Ribosomal protein S18 |
| View | Download | 0.379 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.364 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.363 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.363 | d.58.10 | Acylphosphatase-like |
| View | Download | 0.360 | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.359 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.347 | a.77.1 | DEATH domain |
| View | Download | 0.344 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.342 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.340 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.333 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.333 | d.58.49 | YajQ-like |
| View | Download | 0.329 | a.2.10 | Epsilon subunit of F1F0-ATP synthase C-terminal domain |
| View | Download | 0.326 | d.58.40 | D-ribose-5-phosphate isomerase (RpiA), lid domain |
| View | Download | 0.325 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.319 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.317 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.317 | a.112.1 | Description not found. |
| View | Download | 0.314 | d.50.1 | dsRNA-binding domain-like |
| View | Download | 0.312 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.309 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.306 | a.2.2 | Ribosomal protein L29 (L29p) |
| View | Download | 0.306 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.306 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.301 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.299 | a.74.1 | Cyclin-like |
| View | Download | 0.294 | d.48.1 | RecA protein, C-terminal domain |
| View | Download | 0.293 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.286 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.286 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.285 | a.47.2 | t-snare proteins |
| View | Download | 0.282 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.281 | a.64.1 | Saposin |
| View | Download | 0.279 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.245 | a.77.1 | DEATH domain |
| View | Download | 0.242 | a.13.1 | alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 |
| View | Download | 0.242 | a.74.1 | Cyclin-like |
| View | Download | 0.239 | a.32.1 | Transcription factor IIA (TFIIA), alpha-helical domain |
| View | Download | 0.236 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.232 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.231 | a.38.1 | Helix-loop-helix DNA-binding domain |
| View | Download | 0.231 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.226 | d.58.1 | 4Fe-4S ferredoxins |
| View | Download | 0.226 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.223 | a.5.2 | UBA-like |
| View | Download | 0.218 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.212 | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.212 | a.3.1 | Cytochrome c |
| View | Download | 0.208 | a.7.5 | Tubulin chaperone cofactor A |
|
Region A: Residues: [315-526] |
1 11 21 31 41 51
| | | | | |
1 PEPDNISYRP LLLRRLVAKP AIIIVNMVTF LLCTGYNGQM IYSVQFFQLI FASSAWKAGL 60
61 HLIPIVITNV IAAIASGVIT KKLGLVKPLL IFGGVLGVIG AGLMTLMTNT STKSTQIGVL 120
121 LLPGFSLGFA LQASLMSAQL QITKDRPEAA MDFIEVTAFN TFMKSLGTTL GGVLSTTVFS 180
181 ASFHNKVSRA HLEPYEGKTV DDMILYRLQN YD
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [527-582] |
1 11 21 31 41 51
| | | | | |
1 GSHSTIGNIL SDSIKNVFWM DLGFYALGFL FCSFSSNKKL IIPKKDDTPE DNLEDK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.655 | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.305 | a.5.2 | UBA-like |
| View | Download | 0.299 | a.140.2 | SAP domain |
| View | Download | 0.289 | d.47.1 | Ribosomal protein L11, N-terminal domain |
| View | Download | 0.238 | a.65.1 | Annexin |
| View | Download | 0.201 | g.34.1 | HIV-1 VPU cytoplasmic domain |
