| Protein: | VBA5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 582 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VBA5.
| Description | E-value | Query Range |
Subject Range |
|
|
3.0E-88 | [1..582] | [1..582] |
|
|
2.0E-80 | [1..572] | [1..525] |
|
|
7.0E-75 | [3..582] | [2..575] |
|
|
7.0E-74 | [3..566] | [13..530] |
|
|
1.0E-72 | [2..578] | [65..608] |
|
|
1.0E-72 | [2..574] | [25..574] |
|
|
2.0E-72 | [34..499] | [4..418] |
|
|
3.0E-71 | [2..572] | [68..594] |
|
Region A: Residues: [1-242] |
1 11 21 31 41 51
| | | | | |
1 MEETKYSSQQ EIEGACGSDA SLNARGSNDS PMGLSLYLCL ASLTLVLFIT ALDILIVGTI 60
61 IDVVAEQFGN YSKTGWLVTG YSLPNAILSL IWGRFASIIG FQHSLILAIL IFEAGSLIAA 120
121 LASSMNMLIF GRVVAGVGGS GLQTLCFVIG CTMVGERSRP LVISILSCAF AVAAIVGPII 180
181 GGAFTTHVTW RWCFYINLPI GGLAIIMFLL TYKAENKGIL QQIKDAIGTI SSFTFSKFRH 240
241 QV
|
| Detection Method: |  |
| Confidence: | 9.154902 |
| Match: | 1lviA_ |
| Description: | No description for 1lviA_ was found. |
| Term | Confidence | Notes |
| transporter activity | 4.09176719149278 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 3.59744164024479 | bayes_pls_golite062009 |
| transmembrane transporter activity | 3.5865018981083 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 3.54194478414824 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 2.21266150105753 | bayes_pls_golite062009 |
| organic acid transmembrane transporter activity | 2.15783210522667 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 1.79369588808394 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 1.59419818573076 | bayes_pls_golite062009 |
| secondary active transmembrane transporter activity | 1.22264637452409 | bayes_pls_golite062009 |
| binding | 1.01584233411372 | bayes_pls_golite062009 |
| polyol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| alcohol transmembrane transporter activity | 0.924836669821548 | bayes_pls_golite062009 |
| glycerol transmembrane transporter activity | 0.812001619402678 | bayes_pls_golite062009 |
| symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| solute:cation symporter activity | 0.74591237387473 | bayes_pls_golite062009 |
| cation:sugar symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
| sugar:hydrogen symporter activity | 0.143419068761182 | bayes_pls_golite062009 |
|
Region A: Residues: [243-314] |
1 11 21 31 41 51
| | | | | |
1 NFKRLMNGII FKFDFFGFAL CSAGLVLFLL GLTFGGNKYS WNSGQVITYL VLGVLLFIFS 60
61 LVYDFFLFDK FN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [315-526] |
1 11 21 31 41 51
| | | | | |
1 PEPDNISYRP LLLRRLVAKP AIIIVNMVTF LLCTGYNGQM IYSVQFFQLI FASSAWKAGL 60
61 HLIPIVITNV IAAIASGVIT KKLGLVKPLL IFGGVLGVIG AGLMTLMTNT STKSTQIGVL 120
121 LLPGFSLGFA LQASLMSAQL QITKDRPEAA MDFIEVTAFN TFMKSLGTTL GGVLSTTVFS 180
181 ASFHNKVSRA HLEPYEGKTV DDMILYRLQN YD
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [527-582] |
1 11 21 31 41 51
| | | | | |
1 GSHSTIGNIL SDSIKNVFWM DLGFYALGFL FCSFSSNKKL IIPKKDDTPE DNLEDK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
