| Protein: | UBP11 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 717 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP11.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..717] | [1..717] |
|
|
5.0E-79 | [92..491] | [83..490] |
|
|
9.0E-79 | [121..705] | [107..597] |
|
|
3.0E-78 | [290..705] | [38..376] |
|
|
2.0E-76 | [121..705] | [107..610] |
|
Region A: Residues: [1-54] |
1 11 21 31 41 51
| | | | | |
1 MLLNPDQILN LVRKVYEVDI KQFYSQLRLK NLRGLLDHAA HLFNVYLRDL EINQ
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.839 | 0.029 | ubiquitin-specific protease activity | a.144.1 | PABC (PABP) domain |
|
Region A: Residues: [55-246] |
1 11 21 31 41 51
| | | | | |
1 EMEALTAFII GCYYLYLIIP QSLQFQTRNN LYSSYAKLKN DYQDEHVMGY VLKVVRDEST 60
61 VIVDRYLAES NGICRTIKRK RAYSLPLRPL PVHMASLSIH NKFDGSLHEI PNELTKPTND 120
121 NSKEDIVRES NQIASSNKLE AGSEVAYYTS KEALSKPSYL KLSTGKDALF KTLSSPATAP 180
181 PVHSLEVSSQ IR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [247-382] |
1 11 21 31 41 51
| | | | | |
1 DSSQDSSSSL SKVEKPKEEE GKIEAIESSA PKAYNLPVIE DSNDLLSELS ITGLQNPCNT 60
61 CYINSIIQCL FGTTLFRDLF LTKKYRLFLN TNKYPKEVQL SRSIYVLFKK MYLNGGRAII 120
121 PNRFLKMCKK LRPDLN
|
| Detection Method: | |
| Confidence: | 13.327902 |
| Match: | PF00442 |
| Description: | No description for PF00442 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [383-522] |
1 11 21 31 41 51
| | | | | |
1 IPDDQQDTQE FLLIVLARIH EELSNENVVK YYPDLVSYDA NALQVNPSKY EKWYERNVIT 60
61 DGLSPIDHIY RGQLENILKC QRCGNSSYSY STFYVLSLAI PKLSLYSFTS KSRKIKLEDC 120
121 INLFTGDEEL SGDNAWDCPN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [523-622] |
1 11 21 31 41 51
| | | | | |
1 CRITDSKSKK EEITSQKKKS TIFGFHSRSR SKSPHHHHHH HHSSDDSTKN AKKRNSKKLT 60
61 TIKSLDFIVL PPILVIHLSR FYYDLTKKNS TVITYPLILN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [623-717] |
1 11 21 31 41 51
| | | | | |
1 IILKNGKVIR YKLYGTVNHS GNLINGHYTS VVNKEKSHEI GLNRQVWVTF DDDYIQQHRK 60
61 DRNNFEAGKT EMSSDEVYVL FYERMDEENY EEEFC
|
| Detection Method: | |
| Confidence: | 23.070581 |
| Match: | PF00443 |
| Description: | Ubiquitin carboxyl-terminal hydrolase |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
