| Protein: | UBP11 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 717 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP11.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..717] | [1..717] |
|
|
5.0E-79 | [92..491] | [83..490] |
|
|
9.0E-79 | [121..705] | [107..597] |
|
|
3.0E-78 | [290..705] | [38..376] |
|
|
2.0E-76 | [121..705] | [107..610] |
|
Region A: Residues: [1-54] |
1 11 21 31 41 51
| | | | | |
1 MLLNPDQILN LVRKVYEVDI KQFYSQLRLK NLRGLLDHAA HLFNVYLRDL EINQ
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
|
Region A: Residues: [55-246] |
1 11 21 31 41 51
| | | | | |
1 EMEALTAFII GCYYLYLIIP QSLQFQTRNN LYSSYAKLKN DYQDEHVMGY VLKVVRDEST 60
61 VIVDRYLAES NGICRTIKRK RAYSLPLRPL PVHMASLSIH NKFDGSLHEI PNELTKPTND 120
121 NSKEDIVRES NQIASSNKLE AGSEVAYYTS KEALSKPSYL KLSTGKDALF KTLSSPATAP 180
181 PVHSLEVSSQ IR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [247-382] |
1 11 21 31 41 51
| | | | | |
1 DSSQDSSSSL SKVEKPKEEE GKIEAIESSA PKAYNLPVIE DSNDLLSELS ITGLQNPCNT 60
61 CYINSIIQCL FGTTLFRDLF LTKKYRLFLN TNKYPKEVQL SRSIYVLFKK MYLNGGRAII 120
121 PNRFLKMCKK LRPDLN
|
| Detection Method: | |
| Confidence: | 13.327902 |
| Match: | PF00442 |
| Description: | No description for PF00442 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [383-522] |
1 11 21 31 41 51
| | | | | |
1 IPDDQQDTQE FLLIVLARIH EELSNENVVK YYPDLVSYDA NALQVNPSKY EKWYERNVIT 60
61 DGLSPIDHIY RGQLENILKC QRCGNSSYSY STFYVLSLAI PKLSLYSFTS KSRKIKLEDC 120
121 INLFTGDEEL SGDNAWDCPN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.396 | 0.218 | ubiquitin-specific protease activity | a.26.1 | 4-helical cytokines |
| View | Download | 0.355 | 0.041 | ubiquitin-specific protease activity | d.110.1 | Profilin (actin-binding protein) |
| View | Download | 0.501 | 0.038 | ubiquitin-specific protease activity | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.358 | 0.023 | ubiquitin-specific protease activity | c.23.13 | Type II 3-dehydroquinate dehydratase |
| View | Download | 0.411 | 0.016 | ubiquitin-specific protease activity | c.121.1 | Ribose/Galactose isomerase RpiB/AlsB |
| View | Download | 0.332 | N/A | N/A | a.182.1 | GatB/YqeY domain |
| View | Download | 0.331 | N/A | N/A | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.316 | N/A | N/A | i.11.1 | Computational models partly based on NMR data |
| View | Download | 0.315 | N/A | N/A | c.62.1 | vWA-like |
| View | Download | 0.299 | N/A | N/A | c.23.12 | Formate/glycerate dehydrogenase catalytic domain-like |
| View | Download | 0.258 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.234 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.230 | N/A | N/A | d.218.1 | Nucleotidyltransferase |
| View | Download | 0.225 | N/A | N/A | c.78.2 | Aspartate/glutamate racemase |
| View | Download | 0.218 | N/A | N/A | a.11.2 | Second domain of FERM |
| View | Download | 0.214 | N/A | N/A | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.207 | N/A | N/A | d.13.1 | HIT-like |
|
Region A: Residues: [523-622] |
1 11 21 31 41 51
| | | | | |
1 CRITDSKSKK EEITSQKKKS TIFGFHSRSR SKSPHHHHHH HHSSDDSTKN AKKRNSKKLT 60
61 TIKSLDFIVL PPILVIHLSR FYYDLTKKNS TVITYPLILN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.447 | a.1.1 | Globin-like |
| View | Download | 0.436 | a.118.1 | ARM repeat |
| View | Download | 0.410 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.383 | a.74.1 | Cyclin-like |
| View | Download | 0.396 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.365 | d.192.1 | YlxR-like |
| View | Download | 0.364 | d.58.9 | RuBisCO, large subunit, small (N-terminal) domain |
| View | Download | 0.351 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.347 | c.103.1 | Hypothetical protein MT938 (MTH938) |
| View | Download | 0.313 | d.52.4 | YhbC-like, N-terminal domain |
| View | Download | 0.300 | d.52.3 | Prokaryotic type KH domain (KH-domain type II) |
| View | Download | 0.297 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.287 | c.95.1 | Thiolase-like |
| View | Download | 0.282 | d.52.5 | Probable GTPase Der, C-terminal domain |
| View | Download | 0.278 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.267 | d.52.6 | BolA-like |
| View | Download | 0.264 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.263 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.254 | c.49.1 | Pyruvate kinase, C-terminal domain |
| View | Download | 0.241 | d.58.17 | Metal-binding domain |
| View | Download | 0.230 | d.58.45 | PurS subunit of FGAM synthetase |
| View | Download | 0.225 | a.4.1 | Homeodomain-like |
| View | Download | 0.216 | d.58.47 | Hypothetical protein VC0424 |
| View | Download | 0.215 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.214 | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.209 | d.80.1 | Tautomerase/MIF |
| View | Download | 0.209 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.208 | d.80.1 | Tautomerase/MIF |
|
Region A: Residues: [623-717] |
1 11 21 31 41 51
| | | | | |
1 IILKNGKVIR YKLYGTVNHS GNLINGHYTS VVNKEKSHEI GLNRQVWVTF DDDYIQQHRK 60
61 DRNNFEAGKT EMSSDEVYVL FYERMDEENY EEEFC
|
| Detection Method: | |
| Confidence: | 23.070581 |
| Match: | PF00443 |
| Description: | Ubiquitin carboxyl-terminal hydrolase |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
