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View Structure Prediction Details

Protein: ESL2
Organism: Saccharomyces cerevisiae
Length: 1195 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ESL2.

Description E-value Query
Range
Subject
Range
ESL1 - Putative protein of unknown function, predicted to contain a PINc domain
ESL1_YEAST - EST/SMG-like protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ESL1 PE=1 SV=1
0.0 [276..1195] [208..1118]
gi|9558381, gi|9... - gi|9558384|emb|CAC00495.1| initiation factor 2 [Streptococcus agalactiae], gi|9558381|emb|CAC00493.1...
0.002 [97..257] [30..190]
gi|7494364 - pir||A71608 probable integral membrane protein PFB0710c - malaria parasite (Plasmodium falciparum)
gi|16805041, gi|... - gi|3845257|gb|AAC71931.1| conserved Plasmodium protein [Plasmodium falciparum 3D7], gi|16805041|ref|...
0.002 [190..260] [74..147]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.005 [63..250] [49..238]
gi|208966854 - gi|208966854|dbj|BAG73441.1| neuronal PAS domain protein 3 [synthetic construct]
gi|12328445 - gi|12328445|dbj|BAB21221.1| NPAS3 (MOP6) [Homo sapiens]
0.006 [153..310] [405..555]
gi|15611145, gi|... - gi|4154574|gb|AAD05649.1| putative [Helicobacter pylori J99], gi|15611145|ref|NP_222796.1| hypotheti...
gi|7464596 - pir||H71977 hypothetical protein jhp0074 - Helicobacter pylori (strain J99)
0.007 [191..268] [475..552]
gi|575365 - gi|575365|emb|CAA56732.1| cdc2-related protein kinase 1 [Plasmodium falciparum]
0.007 [55..250] [92..287]

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Predicted Domain #1
Region A:
Residues: [1-1019]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPETSVQNPL RLSENENTRS MFLSASQQQR PSATPSFPRL VRNTTANLSL SDFQVLNPSS  60
   61 KRQNSNSVYD DINSSKRRIS RPRFSDIEGK NNDHTYPERT TVKESEKNPS PRYVSSSKRA 120
  121 LKRENSVGIT QSSALISKSF SENGGSIAHE KWSPENMIKP LNVSQNSLAF VDAGSDEQSK 180
  181 SEIVGGFQRK SNNSQEINDK DNSARDQDFN NSGNNNNNNN HSSNNNDNNN NNNDDNNNNN 240
  241 NSNSRDNNNN SDDSNEREEN DSCKPASNKR SGIALIQKLQ ELYKVIVKQE IELQERCSQL 300
  301 TNSQTTELKS LWTIYKINTD LVNNYVTFIT TALLPSQPPH DLVIGQEIVE IYRIERRLWV 360
  361 YGTITFLDVL KNFSNFMDPE VCCQFITHVF VSLSTMISDI PSKYSITWLQ RLGDLSRMAI 420
  421 ALYPSSFIDW KLSAEHWYTE AMKYIYNHGK LYYHMSTVQQ NTLEAFVNLG KSVFCQETFT 480
  481 PSPQYMQLVI DNIYQRAFVE RNNGNLRNSL LIEYLKHSEA MLLPSFLESP DLQNVVLSYF 540
  541 IEKFGIDANG CNIFNAEDMF VQNPDFFKYF FRHGPSFAQS HILQIVGFGE PKNPFAILFE 600
  601 LPKYLKERKD KKERKKSSNN DSSVTESSTG NSRNDNEDDD EIMSSTTSIS DHDLLAEFFN 660
  661 DIDTLRRPIL PSMLTNEAWL ETLKFLNMTS LKCGIIVLRK FLHGPLGIAL PHILPWIYFI 720
  721 ISICLKSSQL SDPVSKEFWM IIVKRAFPWD TMVTFMNVLI VYLLDNQTSN SIIGDLCDDY 780
  781 DKLSLSELLE LFNEGEELPE ILGCWGTLWF DTICEKNTHS ISSEDNFQEI GIKDYMALDS 840
  841 PTDGIIFDEK DENGEKFWKR ACRTIFLFRE LSRSFPIGVI IRNDPLIYRS SFQNTNILGS 900
  901 LVFKLEPLCN IHNNIPVLGA LESIIDISEA RSENNTDLHA VPELSVNEGD NIFHYVGYKK 960
  961 LRADYTCFDK NGEFLSASLY TTWYVPNSNN TNIEDNINYN SEKENEGLFL ECIKSDYPE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [1020-1195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDFKTTYFVF DATSWLRHSA RIFKLAQNRL LRFAICLTTF QELRFLRKSK DENVMEAATR  60
   61 GIITIRQLYY ENKVLPLRFT GNVATHIEEN LEFEEQITWR THVDEFVIES VMKAQEKLES 120
  121 ASEPRLSPRR FNYVVLISDD DAMKKKAEEK EIKTLSTRFV FSLCTKLGEQ RHLCTD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [271-891]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGIALIQKLQ ELYKVIVKQE IELQERCSQL TNSQTTELKS LWTIYKINTD LVNNYVTFIT  60
   61 TALLPSQPPH DLVIGQEIVE IYRIERRLWV YGTITFLDVL KNFSNFMDPE VCCQFITHVF 120
  121 VSLSTMISDI PSKYSITWLQ RLGDLSRMAI ALYPSSFIDW KLSAEHWYTE AMKYIYNHGK 180
  181 LYYHMSTVQQ NTLEAFVNLG KSVFCQETFT PSPQYMQLVI DNIYQRAFVE RNNGNLRNSL 240
  241 LIEYLKHSEA MLLPSFLESP DLQNVVLSYF IEKFGIDANG CNIFNAEDMF VQNPDFFKYF 300
  301 FRHGPSFAQS HILQIVGFGE PKNPFAILFE LPKYLKERKD KKERKKSSNN DSSVTESSTG 360
  361 NSRNDNEDDD EIMSSTTSIS DHDLLAEFFN DIDTLRRPIL PSMLTNEAWL ETLKFLNMTS 420
  421 LKCGIIVLRK FLHGPLGIAL PHILPWIYFI ISICLKSSQL SDPVSKEFWM IIVKRAFPWD 480
  481 TMVTFMNVLI VYLLDNQTSN SIIGDLCDDY DKLSLSELLE LFNEGEELPE ILGCWGTLWF 540
  541 DTICEKNTHS ISSEDNFQEI GIKDYMALDS PTDGIIFDEK DENGEKFWKR ACRTIFLFRE 600
  601 LSRSFPIGVI IRNDPLIYRS S

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.16
Match: 1ya0A
Description: Crystal structure of the N-terminal domain of human SMG7
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.26999948840808 bayes_pls_golite062009
protein binding 0.305336743191506 bayes_pls_golite062009

Predicted Domain #4
Region A:
Residues: [892-988]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FQNTNILGSL VFKLEPLCNI HNNIPVLGAL ESIIDISEAR SENNTDLHAV PELSVNEGDN  60
   61 IFHYVGYKKL RADYTCFDKN GEFLSASLYT TWYVPNS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [989-1195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNTNIEDNIN YNSEKENEGL FLECIKSDYP EIDFKTTYFV FDATSWLRHS ARIFKLAQNR  60
   61 LLRFAICLTT FQELRFLRKS KDENVMEAAT RGIITIRQLY YENKVLPLRF TGNVATHIEE 120
  121 NLEFEEQITW RTHVDEFVIE SVMKAQEKLE SASEPRLSPR RFNYVVLISD DDAMKKKAEE 180
  181 KEIKTLSTRF VFSLCTKLGE QRHLCTD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.58
Match: 2dokA
Description: No description for 2dokA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle