| Protein: | SRP40 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 406 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRP40.
| Description | E-value | Query Range |
Subject Range |
|
|
4.0E-61 | [6..352] | [1514..1889] |
|
|
8.0E-61 | [6..352] | [1436..1811] |
|
|
9.0E-59 | [3..402] | [726..1123] |
|
|
1.0E-56 | [6..352] | [1514..1889] |
|
|
1.0E-56 | [6..352] | [1514..1889] |
|
|
8.0E-55 | [6..352] | [1516..1889] |
|
|
3.0E-54 | [2..398] | [264..663] |
|
|
3.0E-54 | [6..352] | [1514..1887] |
|
|
2.0E-51 | [2..398] | [71..470] |
|
|
9.0E-48 | [2..405] | [118..531] |
|
Region A: Residues: [1-198] |
1 11 21 31 41 51
| | | | | |
1 MASKKIKVDE VPKLSVKEKE IEEKSSSSSS SSSSSSSSSS SSSSSSSSSG ESSSSSSSSS 60
61 SSSSSDSSDS SDSESSSSSS SSSSSSSSSS DSESSSESDS SSSGSSSSSS SSSDESSSES 120
121 ESEDETKKRA RESDNEDAKE TKKAKTEPES SSSSESSSSG SSSSSESESG SESDSDSSSS 180
181 SSSSSDSESD SESDSQSS
|
| Detection Method: |  |
| Confidence: | 3.39794 |
| Match: | 1deqA_ |
| Description: | Fibrinogen |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [199-406] |
1 11 21 31 41 51
| | | | | |
1 SSSSSSDSSS DSDSSSSDSS SDSDSSSSSS SSSSDSDSDS DSSSDSDSSG SSDSSSSSDS 60
61 SSDESTSSDS SDSDSDSDSG SSSELETKEA TADESKAEET PASSNESTPS ASSSSSANKL 120
121 NIPAGTDEIK EGQRKHFSRV DRSKINFEAW ELTDNTYKGA AGTWGEKANE KLGRVRGKDF 180
181 TKNKNKMKRG SYRGGSITLE SGSYKFQD
|
| Detection Method: | |
| Confidence: | 10.63 |
| Match: | 1ldvA |
| Description: | No description for 1ldvA was found. |
|
Region A: Residues: [285-406] |
1 11 21 31 41 51
| | | | | |
1 TKEATADESK AEETPASSNE STPSASSSSS ANKLNIPAGT DEIKEGQRKH FSRVDRSKIN 60
61 FEAWELTDNT YKGAAGTWGE KANEKLGRVR GKDFTKNKNK MKRGSYRGGS ITLESGSYKF 120
121 QD
|
| Detection Method: | |
| Confidence: | 54.657577 |
| Match: | PF05022.3 |
| Description: | No description for PF05022.3 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
