| Protein: | PXL1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 706 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PXL1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..706] | [1..706] |
|
|
0.0 | [1..706] | [1..706] |
|
|
2.0E-91 | [121..690] | [9..512] |
|
|
3.0E-89 | [121..690] | [9..512] |
|
|
9.0E-84 | [121..690] | [9..514] |
|
|
1.0E-79 | [224..690] | [69..511] |
|
Region A: Residues: [1-191] |
1 11 21 31 41 51
| | | | | |
1 MYNSIYGSPF PKINPKVRYK TALERAGFDT KPRNPFSSQR NASTGSLQAS VKSPPITRQR 60
61 NVSAAPSVPV TMKSAYTASS KSAYSSVKGE SDIYPPPVLE NSERRSVTPP KNSNFTSSRP 120
121 SDISRSISRP SERASQEDPF RFERDLDRQA EQYAASRHTC KSPANKEFQA ADNFPFNFEQ 180
181 EDAGNTEREQ D
|
| Detection Method: |  |
| Confidence: | 9.74 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [192-419] |
1 11 21 31 41 51
| | | | | |
1 LSPIERSFMM LTQNDTASVV NSMNQTDNRG VLDQKLGKEQ QKEESSIEYE SEGQQEDEND 60
61 IESLNFEPDP KLQMNLENEP LQDDFPEAKQ EEKNTEPKIP EINVTRESNT PSLTMNALDS 120
121 KIYPDDNFSG LESSKEQKSP GVSSSSTKVE DLSLDGLNEK RLSITSSENV ETPYTATNLQ 180
181 VEQLIAQLDD VSLSRNAKLD MNGNCLNAVD RKASRFKKSS AYLSGYPS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [420-551] |
1 11 21 31 41 51
| | | | | |
1 MDIPVTQQTS IVQNSNTNLS RQTILVDKGD VDEDAPSEST TNGGTPIFYK FKQSNVEYSN 60
61 NEGMGSQETF RTKLPTIEAL QLQHKRNITD LREEIDNSKS NDSHVLPNGG TTRYSSDADY 120
121 KETEPIEFKY PP
|
| Detection Method: | |
| Confidence: | 13.19 |
| Match: | 1k83A |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [552-617] |
1 11 21 31 41 51
| | | | | |
1 GEGPCRACGL EVTGKRMFSK KENELSGQWH RECFKCIECG IKFNKHVPCY ILGDEPYCQK 60
61 HYHEEN
|
| Detection Method: | |
| Confidence: | 23.69897 |
| Match: | 1b8tA_ |
| Description: | Cysteine-rich (intestinal) protein, CRP, CRIP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.17633019871302 | bayes_pls_golite062009 |
| protein binding | 1.41749048987708 | bayes_pls_golite062009 |
| DNA binding | 0.496807292975971 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.120591949731806 | bayes_pls_golite062009 |
| nucleic acid binding | 0.0241472448802372 | bayes_pls_golite062009 |
|
Region A: Residues: [618-706] |
1 11 21 31 41 51
| | | | | |
1 HSICKVCSNF IEGECLENDK VERFHVDCLN CFLCKTAITN DYYIFNGEIP LCGNHDMEAL 60
61 LKEGIDNATS TNDKNNTLSK RRTRLINFN
|
| Detection Method: | |
| Confidence: | 23.69897 |
| Match: | 1b8tA_ |
| Description: | Cysteine-rich (intestinal) protein, CRP, CRIP |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.17633019871302 | bayes_pls_golite062009 |
| protein binding | 1.41749048987708 | bayes_pls_golite062009 |
| DNA binding | 0.496807292975971 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.120591949731806 | bayes_pls_golite062009 |
| nucleic acid binding | 0.0241472448802372 | bayes_pls_golite062009 |
