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View Structure Prediction Details

Protein: MRPL20
Organism: Saccharomyces cerevisiae
Length: 195 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL20.

Description E-value Query
Range
Subject
Range
gi|190409897 - gi|190409897|gb|EDV13162.1| 60S ribosomal protein L20, mitochondrial precursor [Saccharomyces cerevi...
gi|3976 - gi|3976|emb|CAA37833.1| mitochondrial ribosomal protein YmL20 [Saccharomyces cerevisiae]
0.0 [1..195] [1..195]

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Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGRGVCCRS FHTAGSAWKQ FGFPKTQVTT IYNKTKSASN YKGYLKHRDA PGMYYQPSES  60
   61 IATGSVNSET IPRSFMAASD PRRGLDMPVQ STKAKQCPNV LVGKSTVNGK TYHLGPQEID 120
  121 EIRKLRLDNP QKYTRKFLAA KYGISPLFVS MVSKPSEQHV QIMESRLQEI QSRWKEKRRI 180
  181 AREDRKRRKL LWYQA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [67-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSETIPRSFM AASDPRRGLD MPVQSTKAKQ CPNVLVGKST VNGKTYHLGP QEIDEIRKLR  60
   61 LDNPQKYTRK FLAAKYGISP LFVSMVSKPS EQHVQIMESR LQEIQSRWKE KRRIAREDRK 120
  121 RRKLLWYQA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.995
Match: 2h8rA
Description: No description for 2h8rA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle