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View Structure Prediction Details

Protein: MRPL20
Organism: Saccharomyces cerevisiae
Length: 195 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL20.

Description E-value Query
Range
Subject
Range
gi|190409897 - gi|190409897|gb|EDV13162.1| 60S ribosomal protein L20, mitochondrial precursor [Saccharomyces cerevi...
gi|3976 - gi|3976|emb|CAA37833.1| mitochondrial ribosomal protein YmL20 [Saccharomyces cerevisiae]
0.0 [1..195] [1..195]

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Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGRGVCCRS FHTAGSAWKQ FGFPKTQVTT IYNKTKSASN YKGYLKHRDA PGMYYQPSES  60
   61 IATGSVNSET IPRSFMAASD PRRGLDMPVQ STKAKQCPNV LVGKSTVNGK TYHLGPQEID 120
  121 EIRKLRLDNP QKYTRKFLAA KYGISPLFVS MVSKPSEQHV QIMESRLQEI QSRWKEKRRI 180
  181 AREDRKRRKL LWYQA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [67-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSETIPRSFM AASDPRRGLD MPVQSTKAKQ CPNVLVGKST VNGKTYHLGP QEIDEIRKLR  60
   61 LDNPQKYTRK FLAAKYGISP LFVSMVSKPS EQHVQIMESR LQEIQSRWKE KRRIAREDRK 120
  121 RRKLLWYQA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.995
Match: 2h8rA
Description: No description for 2h8rA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle