| Protein: | RPF2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 344 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPF2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..344] | [1..344] |
|
|
0.0 | [3..299] | [6..290] |
|
|
0.0 | [1..295] | [1..292] |
|
|
0.0 | [1..304] | [3..295] |
|
|
0.0 | [3..249] | [6..240] |
|
|
0.0 | [1..297] | [1..286] |
|
|
1.0E-94 | [4..305] | [5..300] |
|
Region A: Residues: [1-262] |
1 11 21 31 41 51
| | | | | |
1 MIRTVKPKNA RAKRALVKRE AKLVENVKQA LFIPGQSCNK NLHDIMVDLS ALKKPDMKRF 60
61 NRKNDIHPFE DMSPLEFFSE KNDCSLMVLM TSSKKRKNNM TFIRTFGYKI YDMIELMVAD 120
121 NFKLLSDFKK LTFTVGLKPM FTFQGAAFDT HPVYKQIKSL FLDFFRGEST DLQDVAGLQH 180
181 VISMTIQGDF QDGEPLPNVL FRVYKLKSYK SDQGGKRLPR IELVEIGPRL DFKIGRIHTP 240
241 SPDMVTEAHK KPKQLEMKTK KN
|
| Detection Method: |  |
| Confidence: | 168.022276 |
| Match: | PF03679 |
| Description: | No description for PF03679 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| aminoacyl-tRNA ligase activity | 3.51611427841435 | bayes_pls_golite062009 |
| ligase activity, forming carbon-oxygen bonds | 3.51602790171379 | bayes_pls_golite062009 |
| ligase activity, forming aminoacyl-tRNA and related compounds | 3.51602790171379 | bayes_pls_golite062009 |
| ligase activity | 2.39787140469438 | bayes_pls_golite062009 |
| binding | 1.79619860046184 | bayes_pls_golite062009 |
| proline-tRNA ligase activity | 1.61792117479721 | bayes_pls_golite062009 |
| catalytic activity | 0.853948963582441 | bayes_pls_golite062009 |
| protein binding | 0.668055564043996 | bayes_pls_golite062009 |
|
Region A: Residues: [263-344] |
1 11 21 31 41 51
| | | | | |
1 VELDIMGDKL GRIHMGKQDL GKLQTRKMKG LKSKFDQGTE EGDGEVDEDY EDEASYSDDG 60
61 QEYEEEFVSA TDIEPSAKRQ KK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.667 | a.74.1 | Cyclin-like |
| View | Download | 0.345 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.667 | a.74.1 | Cyclin-like |
| View | Download | 0.462 | a.74.1 | Cyclin-like |
| View | Download | 0.345 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.330 | a.74.1 | Cyclin-like |
| View | Download | 0.297 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.297 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.293 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.276 | f.28.1 | Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.273 | a.39.1 | EF-hand |
| View | Download | 0.255 | a.112.1 | Description not found. |
| View | Download | 0.239 | e.37.1 | Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains |
| View | Download | 0.233 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.226 | a.77.1 | DEATH domain |
| View | Download | 0.215 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
