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Protein Overview: SPAC926.08c

General Information:
Name(s) found: SPAC926.08c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • Brix doamin protein Rpf2 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 317 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article][ISSLink to PubMed article]
    small nucleolar ribonucleoprotein complex [ISSLink to PubMed article]
    Biological Process: ribosome biogenesis [ISSLink to PubMed article]
    rRNA processing [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRQVKPKNA RTKRALEKRE PKLVEGAKTA IFLRGNATSQ ISLDVLGDIH ALKKPFSVNF  60
   61 QKKNNILPFE DASSLEFFSE KNDAALAVMA THNKKRPHNL TWVRFFNYRV LDMIELGIVN 120
  121 YKSIQSFSAT PIVPGTKPMI LFQGPVFDAH PTYRHIKSLF LDFFRGEPIQ KLDSAGLSYV 180
  181 IVVSAAEAQE DETKPLPLVH FRVYGTKLLK TKTNLPRVEL EEMGPRIDFN IRRVQPAESD 240
  241 VLEEALKKPK TQEPKPKKNV DVDIIGNKVG RIHVDQQDLG NLQTRKMKGL KRSVEEREDS 300
  301 ENEEVEIEED VISDASE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..248] FFAS03 3.86 Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
    2 View Details [249..317] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • aminoacyl-tRNA ligase activity
    		•  3.51611427841435 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  3.51602790171379 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  3.51602790171379 bayes_pls_golite062009
  • ligase activity
    		•  2.39787140469438 bayes_pls_golite062009
  • binding
    		•  1.79619860046184 bayes_pls_golite062009
  • proline-tRNA ligase activity
    		•  1.61792117479721 bayes_pls_golite062009
  • catalytic activity
    		•  0.853948963582441 bayes_pls_golite062009
  • protein binding
    		•  0.668055564043996 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle