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View Structure Prediction Details

Protein: RHO4
Organism: Saccharomyces cerevisiae
Length: 291 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RHO4.

Description E-value Query
Range		 Subject
Range
RHO4 - Non-essential small GTPase of the Rho/Rac subfamily of Ras-like proteins, likely to be involved in t...
RHO4_YEAST - GTP-binding protein RHO4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RHO4 PE=1 SV=2
 0.0 [1..291] [1..291]
ARA5_ARATH - Ras-related protein ARA-5 - Arabidopsis thaliana (Mouse-ear cress)
 1.0E-93 [17..274] [12..257]
RIC2_ORYSA - Ras-related protein RIC2 - Oryza sativa (Rice)
RIC2_ORYSJ - Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2
gi|125555691 - gi|125555691|gb|EAZ01297.1| hypothetical protein OsI_23327 [Oryza sativa Indica Group]
 3.0E-86 [59..279] [1..217]
RB11B_TOBAC - Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1
 1.0E-85 [59..279] [1..217]
YPT3_NICPL - Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1
 3.0E-85 [64..279] [5..218]
gi|6688535 - gi|6688535|emb|CAB65172.1| Rab11 GTPase [Solanum lycopersicum]
 3.0E-85 [64..279] [5..218]

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Predicted Domain #1
Region A:
Residues: [1-62] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTLLFKRKG GNCGNESNIV SQGSPSSSNL PESPGTLDEK NLPRLPTPFA RSLSTIPSYE  60
   61 QM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [63-291] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRTNKLPDYH LKIVVVGDGA VGKTCLLISY VQGTFPTDYI PTIFENYVTN IEGPNGQIIE  60
   61 LALWDTAGQE EYSRLRPLSY TNADVLMVCY SVGSKTSLKN VEDLWFPEVK HFCPSTPIML 120
  121 VGLKSDLYEA DNLSDLVEPS SAESLAKRLG AFAHIQCSAR LKENIDEVFE TAIHTLLSDS 180
  181 LYAPREPTHT IKNPFKRNTT RSDIDSSTGD TSVSISGTKR LRKNKCIIM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 559.927757
Match: 1lb1B_
Description: RhoA
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle